Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00418 ATGGTGTCAAACGAAGGTGCGACAACAGTTGCGAACGGTTGTTGGGGGCTTAGTTCACGCGTAGGTAGCGACTGTGGATCCACGTTAGTTGGGGACAATGGTTTTTCGGAAGCAACAACAATGGCGGAAGAGGCACGGCTCGACAGTGGTGACAATGGCGAAAGAGGCACGACGCGACAACGGAAACAAACCGTGGTTGGAGGCAACGATGAAGGGAAGACGAAGAAGAACCCAATGTTGCGGTGGAAGAAGAAGAACGATAGTTGTTGTGCGCAACCCTCATTGCAGGGAGATCATCCGGAAGTGATAGAGGAGTATTTGAAAAATGGCCATGCCAAATGCATTGCCTTCAATCCTCGTGGTAAACTTCTTGCTGCTGGGTGCATGGACGGAAGGTGCGTTATCTGGGATTTTGAAAGCAGGGGCATTGCTAAAGAGCTTAAAGATGAAGAATGTTCATCTCCAATAAACAGTGTCTGCTGGTCGAGGTGTGGTAATCGAATTCTTTTGTCTTCTGCTGACAAGTCATTGTTACTGTGGAATGTGAAGAGTGGTGATAGGATAAAAAGAATAGTTTTAGAACACAGCCCTCTACAAGCTCGTCTTCATCCACGTTACCCTAATCCAGCTCTTTGCTTGGCATGCCCTCTCTCACGTCCTCCAATGATTGTTGACTTGAACACAGAAAACACAACTTTGCTTAAAGTTTCTCTCTTGGAGACAGAAGAACCAACCCCTCCCTCACATAACAGGCGTGTTGAAGGAACTACTTTATTATCACCAACTCCTACGTGTTTTAACAAGTATGGAAACCTTGTTTATGTGGGAAACTCAAAGGGGGAAATTCTTGTAATCAACCATGTAAACAATGAGGTTCGTGCCATGATTCCTATCTCTAGTGGTTGGGAAGTGAGGAACATTGTGTTCAGCAGAAATGGACAGCACCTTTTAGCAAATTCAAATGATCGAGTAATCCGGATATATGAAAACCTTCTACCTCTGAAAGATGAAGTTAGAGCACTTGATGATCTGAAAGAAAAACACAAAGGCCTAAAAGCTGTTGAGAAGTTGAAGGCCGTAGGATCAAAGTGTTTGACTTTGATCCGGGAGCTTCAAGATTCAACCATGACTGTTCACTGGAAATCACCCTGCTTCATTGGCAATGGACAGTGGGTTGCTGGTGGTTCTGCTAGGAGAGGAGGGCACCAGATTTACATATGGGGTGTAGTTGGAGAAGCGAAAATCCTTGAAGGGCCTAACCAAAAAATTGTTGATTTAGCATGGCATCCTGTGCGCCCTGTTCTTGTATCTGTTTCTTCAACTGGCACTGTTTATATCTGGGCCAAAGCTTACACAGAGGAATGGAGTGCATGTTTTCCTGATTTCAAAGAGATTGAGGAAAACCAGGAGTGTGTAAGATGA 1422 0.4487 MVSNEGATTVANGCWGLSSRVGSDCGSTLVGDNGFSEATTMAEEARLDSGDNGERGTTRQRKQTVVGGNDEGKTKKNPMLRWKKKNDSCCAQPSLQGDHPEVIEEYLKNGHAKCIAFNPRGKLLAAGCMDGRCVIWDFESRGIAKELKDEECSSPINSVCWSRCGNRILLSSADKSLLLWNVKSGDRIKRIVLEHSPLQARLHPRYPNPALCLACPLSRPPMIVDLNTENTTLLKVSLLETEEPTPPSHNRRVEGTTLLSPTPTCFNKYGNLVYVGNSKGEILVINHVNNEVRAMIPISSGWEVRNIVFSRNGQHLLANSNDRVIRIYENLLPLKDEVRALDDLKEKHKGLKAVEKLKAVGSKCLTLIRELQDSTMTVHWKSPCFIGNGQWVAGGSARRGGHQIYIWGVVGEAKILEGPNQKIVDLAWHPVRPVLVSVSSTGTVYIWAKAYTEEWSACFPDFKEIEENQECVR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00418 473 Gene3D - 21 213 IPR015943 GO:0005515
Vian5g00418 473 Coils Coil 334 354 - -
Vian5g00418 473 Pfam WD domain, G-beta repeat 154 181 IPR001680 GO:0005515
Vian5g00418 473 Pfam WD domain, G-beta repeat 110 137 IPR001680 GO:0005515
Vian5g00418 473 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Vian5g00418 473 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 94 471 IPR037850 GO:0048188
Vian5g00418 473 ProSitePatterns Trp-Asp (WD) repeats signature. 168 182 IPR019775 -
Vian5g00418 473 MobiDBLite consensus disorder prediction 44 77 - -
Vian5g00418 473 SMART WD40_4 140 181 IPR001680 GO:0005515
Vian5g00418 473 SMART WD40_4 99 137 IPR001680 GO:0005515
Vian5g00418 473 SMART WD40_4 289 329 IPR001680 GO:0005515
Vian5g00418 473 SMART WD40_4 409 448 IPR001680 GO:0005515
Vian5g00418 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 447 IPR001680 GO:0005515
Vian5g00418 473 Gene3D - 221 461 IPR015943 GO:0005515
Vian5g00418 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 153 190 IPR001680 GO:0005515
Vian5g00418 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 146 IPR001680 GO:0005515
Vian5g00418 473 SUPERFAMILY WD40 repeat-like 113 448 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00418 Vian-Chr5 10842619 10845725 Dispersed