Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00415 ATGGAGGAACTCCAGGAAAAGATCGTTGAATTTATCCGTATTGAGGACATGAGGAACTCGAGGAAGAAGCAACAACAAGAGAGGCCCTCGCCGAAAGATGCCGACAAAGGAAGAGCCTGTCATTTTCATCAAAACCATGGTCACTCTACAGAAGAGTGCGCCACGGTGAAGGATGAGATAGAAAGGCTCGTTCGAGCAGGATATCTCCAAAAATACGTTGAGGGAGGAGCTAGAGTAAGAAGTCCCCTCAAAGAAAAAGCTTTACGTAGAAGTCCCGAGCGGTCATCAAGAAAAGACGATCGGCGTAGGAGACATTCCCGAAGCCGTAGTCGTGATCCTGAACAGGAAAGATCGACACCTGAGGAGTTTAAAAGCTGTTCAAATGATAGATCGCCCACATCGATCTATGCCGACTATTACCTTTACCGATGCAGATTTTCATGCTCTCGACCCCGACCAAGAAGATCCTATGGTCATCACCGTCGAGATAACACAGTACCAGCTCCATTCAATGAGCAAATCGTAGGGTTCGCAGGTGAAAGAGTAGATACACGAGGATATCTAGACCTACGAACTCGAATCAGAACAGGTAAGGAAGCGAGAGAGCTCAGACAAATGTCTCTTAAGATGAAAGAATCAAGGACAAAGAAACAGCCTGAAGGTGATTCTGAGATTTCAGCATGGGTTAGTAAAAGCCGCAAGTTAGAAAAGAAAAGAGCATTGCAGCTCTCAAAGATTTTTGAGGAGCAGGACAAAATTGCAGTAGAGGGAAGTGATGATGAGGATACAGCCCAACACACTGAAAACCTGGCGGGGCTGAAAGTTCTCCATGGCCTTGATAAAGTTATGGAAGGCGGTACAGTAGTTTTAACTATTAAAGATCAGCCCATACTTGCTGATGGTGATGTTAATGAAGAGGTTGACATGCTCGAGAACATTGAAATTGGAGAACAGAAACGACGAGACGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGTGTATATGATGATAAGTTCAATGACGATCCCTCCTTGGAGAAGAAAATGTTGCCACAGTATGATGATCCAGCTGCAGAAGAGGGAGTAACTTTGGATGAAAAGGGACGGTTCTCAGGTGAAGCTGAGAAGAAACTTGAAGAGCTGCGAAGAAGGTTAACAGGTGTTTCCACAAATACCTTTGAAGATCTTACTTCATCTGGAAAGGTATCATCAGATTACTATACTCATGAAGAAATGCTAAAATTTAAGAAGCCCAAGAAGAAAAAGTCCTTACGGAAGAAAGATAAGCTAGACATTAATGCCCTTGAAGCTGAAGCTGTCTCTTCAGGATTGGGTGTTGGTGACCTTGGTTCTCGGAACTATGTGAGGAGGCAAGCTATCAAAGAAGAGCAAGAAAGATTGGAGTCTAAGATAAGAAGTAATGCTTACCAGTCTGCTTATGCTAAAGCAGAGGAAGCCTCCAAATTGCTGCGTCAGGAACAAACTCTCAATGTTAAAACAGAGGAAGATGAAACTCCAGCTTTTGTAGATGATGATGAGGATCTTCGTAAATCCTTAGAGAAAGCAAGAAGATTAGCTCTTAAAAAGCATGAGGAAAATGGGGTATCTGGTCCTCAAGCTATTGCGTTGCTTGCTACCTCAAATCATAATAATGAGACTGATGGTGAAAACCCCACGGCTGGAGAATCACGTGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTACTGTTCCTGATGAAGAAAAGACTAATGAGGCTGGTGGATGGACTGAAGTTCAAGAAACTAATGAAGATGAACAACCCAATAAGGAAGACAAAGAGGAAATCGTTCCTGATGAAAATATCCATGAAGTTGCTGTAGGGAAAGGATTGTCAGGTGCTTTGAAACTGCTTAAAGATCGAGGAACACTTAAGGAAAGCATTGAATGGGGTGGCAGAAATATGGACAAGAAGAAAAGTAAATTGGTTGGAATTGTAGATGATGACGAGAAGGAAACTCAGAAAAAAAGGGAGATTCGCATTGAAAGGACTGATGAATTTGGGAGAATTTTAACTCCTAAGGAAGCCTTTCGAATGATTTCTCATAAGTTCCACGGTAAAGGACCTGGAAAAATGAAGCAAGAGAAGCGTATGAAGCAATATCAAGAAGAATTGAAGATGAAACAAATGAAGAGTTCCGATACACCATCACTGTCTGTGGAGAGGATGCGGGAAGCTCAAGCTCGTTTGCAGACCCCCTATCTTGTTCTCAGTGGTCATGTTAAACCAGGACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAAGATCTTCCTGGTGGCTTGACACCTATGCTTGGGGATCGTAAGGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAGACATCAAGCTCCGATAACCCAAAAAAGCCTAAATCATAA 2511 0.4261 MEELQEKIVEFIRIEDMRNSRKKQQQERPSPKDADKGRACHFHQNHGHSTEECATVKDEIERLVRAGYLQKYVEGGARVRSPLKEKALRRSPERSSRKDDRRRRHSRSRSRDPEQERSTPEEFKSCSNDRSPTSIYADYYLYRCRFSCSRPRPRRSYGHHRRDNTVPAPFNEQIVGFAGERVDTRGYLDLRTRIRTGKEARELRQMSLKMKESRTKKQPEGDSEISAWVSKSRKLEKKRALQLSKIFEEQDKIAVEGSDDEDTAQHTENLAGLKVLHGLDKVMEGGTVVLTIKDQPILADGDVNEEVDMLENIEIGEQKRRDEAYKAAKKKTGVYDDKFNDDPSLEKKMLPQYDDPAAEEGVTLDEKGRFSGEAEKKLEELRRRLTGVSTNTFEDLTSSGKVSSDYYTHEEMLKFKKPKKKKSLRKKDKLDINALEAEAVSSGLGVGDLGSRNYVRRQAIKEEQERLESKIRSNAYQSAYAKAEEASKLLRQEQTLNVKTEEDETPAFVDDDEDLRKSLEKARRLALKKHEENGVSGPQAIALLATSNHNNETDGENPTAGESRENKVVFTEMEEFVWGLHIDEEARKPESEDVFMHDDEEATVPDEEKTNEAGGWTEVQETNEDEQPNKEDKEEIVPDENIHEVAVGKGLSGALKLLKDRGTLKESIEWGGRNMDKKKSKLVGIVDDDEKETQKKREIRIERTDEFGRILTPKEAFRMISHKFHGKGPGKMKQEKRMKQYQEELKMKQMKSSDTPSLSVERMREAQARLQTPYLVLSGHVKPGQTSDPKSGFATVEKDLPGGLTPMLGDRKVEHFLGIKRKAETSSSDNPKKPKS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00415 836 PANTHER SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES 38 798 IPR005011 GO:0000398
Vian5g00415 836 Pfam SART-1 family 198 683 IPR005011 GO:0000398
Vian5g00415 836 Pfam SART-1 family 694 744 IPR005011 GO:0000398
Vian5g00415 836 MobiDBLite consensus disorder prediction 74 129 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 106 124 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 779 809 - -
Vian5g00415 836 Coils Coil 371 391 - -
Vian5g00415 836 Coils Coil 731 751 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 14 53 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 78 99 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 623 639 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 600 639 - -
Vian5g00415 836 MobiDBLite consensus disorder prediction 547 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00415 Vian-Chr5 10745730 10757505 Dispersed