Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00414 ATGGCTGCAACCACCACTCTCTCCTTCCACTTTCCATATCGAAAGCTCTCTTCGCGCTCTCAATTTTCCCTCTCTTCACCTTCTTCCCGCTTGAAATCCTACACTGTTGCTTCCCGCTACAATCTCTGCATCTCCACCACCGCCACCCTCTCTCTGTTGGCTTTCCGAAGCCCAAACTCTCCGACGTTTCTCGCAAAGGCTACTCGGAACACTCAGCCCATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCATTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAGAGGCTGCTGTCCAGAGCCTGAGAGTAGAATTTGGGGAGCAGTATGTGTGGGGAACTAAATGTGATGTGAGAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAACTGAAATATATTGATATATGGATCAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTGACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGGACCAACCTCGAGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCGGATGGGAGGCCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCACTTAACGAAGTCCTTACAGGCAGAATTGAAGATGCAAGATGTTAAAAATGTCCTAGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCCGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCGGCTGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCCATCCCTGCAAACGGATCAAAGAAACCAACATACATTCGATTCCTCACCGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTGGCATTCGGAGCAAGAAGGAACCGATACATTCTTGAAGATTGA 1044 0.4406 MAATTTLSFHFPYRKLSSRSQFSLSSPSSRLKSYTVASRYNLCISTTATLSLLAFRSPNSPTFLAKATRNTQPMLPPFNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVEAAVQSLRVEFGEQYVWGTKCDVRNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVDQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELKMQDVKNVLVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSKKPTYIRFLTGLKAYSQIFSRLAFGARRNRYILED 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00414 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 298 IPR036291 -
Vian5g00414 347 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 67 344 - -
Vian5g00414 347 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 219 247 IPR020904 GO:0016491
Vian5g00414 347 Pfam short chain dehydrogenase 80 275 IPR002347 -
Vian5g00414 347 PRINTS Glucose/ribitol dehydrogenase family signature 256 273 IPR002347 -
Vian5g00414 347 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Vian5g00414 347 PRINTS Glucose/ribitol dehydrogenase family signature 232 251 IPR002347 -
Vian5g00414 347 PRINTS Glucose/ribitol dehydrogenase family signature 155 166 IPR002347 -
Vian5g00414 347 PRINTS Glucose/ribitol dehydrogenase family signature 205 221 IPR002347 -
Vian5g00414 347 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 75 320 - -
Vian5g00414 347 CDD SDR_c 80 301 - -
Vian5g00414 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 219 IPR002347 -
Vian5g00414 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 232 251 IPR002347 -
Vian5g00414 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 166 IPR002347 -
Vian5g00414 347 Gene3D - 78 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00414 Vian-Chr5 10657279 10672363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00414 80 272 Acyl Lipid Metabolism Gene Families AT1G24360 30.808 2.26e-16 77.0