Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00413 ATGGCACAAAAACCAGTTTTCCTTTCTCTTTTACCCCTTCTAATCTTGTTTCTTGCCAACATCCAACTTTCAGAGCAGTTAGAGTTTTCTCAGTCTCAGACACTTCTCAAGGTTCAGCAACTTCTTGGTTATCCATCAGCATTAAGTGCCCTCAGCAGCACCTCAGACTTCTGCAATATTGAGCCTACCCCATATTTGACAATAGTCTGCTATGAGGATAGCTTGACACAGCTTCATGTTGTTGGCAACAATGATTTTACTACACTGCCTCCAAACTTCTCCTCTGATACTCTTTTTACTACAATAGGAACTCTGTCAAGCTTGAAAGTCCTCTCTCTTGTTTCTCTTGGACTCTGGGGGCCCTTGCCTGAAAGCATTGCACAGTTGTCTTCATTGGAAATACTTAACATTAGCTCAAACTACTTCAATGGAGTCATTCCATCTCAGCTTTCACTTCTCAGGAACCTGCAGTCAGTGGTGCTTGATGATAACAACATCAATGGTGAAATTCCTAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAAGAAAAACTGGCTATGTGGGAGCCTTCCAACTTCATTGGATGCTCTTCAGACCTTGAGGGTGTTGGATCTGTCAAGTAATCAGTTATCTGGGGAAGTTCCTCATCTTAAGAATTTGGCTAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCACTCCCCACCAAGTTAGTTTCTCTTGTGCTCAGAAATAACAGCTTCAGGCTAAGTGTCCCTTCTGGTTTAAATTCTTTGTATCTGCTCCAAAGGCTAGACCTTTCTTTGAATGGCTTTGTGGGGCCATTTCCACCATCATTATTGTCACTGCCTTCCATAAATTACCTTGATATTTCCTCAAATAAATTCACTGGAATGCTTTTCAGTAACACGTCATGCAATGATGATCTCCACTTTGTAAATTTGTCTTCAAATCTTCTGAAAGGGGAAATTCCCTCTTGTTTGGAACCAAAGACCAGGGTTGTTCTGTATGATGGCAACTGCTTATCAAATAAGAACCAAGATCAGCATCCTTTACATTTTTGCAGCAATGAGGCTTTGGCAGTGAAAATCATACCTCGTGAACCAAAACACAAGAGAACAACTGGTAAAACAGTTATTGTATCAAGTATGGGAAGTGTGGTAGGTGTAGTGTTGATTCTAGGAGTGGTTATCTTGGTTGTTAGCCGAGTTCACAAGAAACAGGTAGTGAAAATCCCTTCAAAGTCCCCTTTGGAAAATGTCACCAGCCAGTTACATAATGAAGATGAAGTGAAAACTACTACAAGGTCCATAATGGAGCATATCATCAAAAGGGTTCCTGACAAACGTGCTGTGGAAACACTGACAAGATCCATAAAGGAGCATGTAATGAGCCGAGTGAAAAATAAGCGTGTTGTTAGGGCATCAACAAGGTCCATAATAGAACATGTATCATCAGTTAACACAGCAAAACTACTCACAGATGCAAGGTATATATCAGAAACAATGAAGATGGGAGCCAGCCTTCCTCCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTTGATTCATCCTGTTTCATAAGTGAAGGCCCACATGGTCAGATTTATAAAGGGGTTCTCTCTGATGGGATGCACATTTCTATTAGAGGTTTGAAAATGAGGAAGAGACATAGCCCTCAAACTTACATGCACCATGTTGAGATGATTTCAAAACTAAGGCATTCACACTTGGTTAGTGCTCTTGGGCATGCTTTTGAGTGCAACCAGGATGATTCGTGTGTGAACAGTGTATTTCTCATATTTGAGTTTGTTCCAAACAGAAGTTTACGAAGCTGCGTTTCTGGATCTTCTGGGGAAAAGATTTCTTGGACTCAGAGAATAGCAGCTACAATTGGAGTGGTGAAGGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTCAAGATTACAGATATTGTTTTGGATAACAATCACAATGTTAAAATAAGCAGCTACAATCTGCCACTCTCTTCTGAAAATAAAAGAATGATAAGCAATGGAACTTACCCTGGACTCAAAGGAAATGTCCAAGCAAGGATAAAGGGTGAAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGCCGACCAATAATGTTTCACAATGAAGTTGGAACACTAAAAGATCTTTTACATGTAAGCATTAAAACTGATGACATAGCTAGAAGAAGTATTGTTGACCCAGCAGTTCACAAGGAATGCTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTGTCTCTGATGACCTAACTGAAAGGCCTTCTGTGGAAGATATTCTCTGGAACTTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAAAAGAGACTCAAGTGATCACAGTTACTCTCCTGCACTATCCTCCAGGGATTAA 2508 0.4015 MAQKPVFLSLLPLLILFLANIQLSEQLEFSQSQTLLKVQQLLGYPSALSALSSTSDFCNIEPTPYLTIVCYEDSLTQLHVVGNNDFTTLPPNFSSDTLFTTIGTLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNYFNGVIPSQLSLLRNLQSVVLDDNNINGEIPNWVGSLQGLAVLSMKKNWLCGSLPTSLDALQTLRVLDLSSNQLSGEVPHLKNLANLQVLNLENNTFGPHFPSLPTKLVSLVLRNNSFRLSVPSGLNSLYLLQRLDLSLNGFVGPFPPSLLSLPSINYLDISSNKFTGMLFSNTSCNDDLHFVNLSSNLLKGEIPSCLEPKTRVVLYDGNCLSNKNQDQHPLHFCSNEALAVKIIPREPKHKRTTGKTVIVSSMGSVVGVVLILGVVILVVSRVHKKQVVKIPSKSPLENVTSQLHNEDEVKTTTRSIMEHIIKRVPDKRAVETLTRSIKEHVMSRVKNKRVVRASTRSIIEHVSSVNTAKLLTDARYISETMKMGASLPPYRTFALDELKEATNNFDSSCFISEGPHGQIYKGVLSDGMHISIRGLKMRKRHSPQTYMHHVEMISKLRHSHLVSALGHAFECNQDDSCVNSVFLIFEFVPNRSLRSCVSGSSGEKISWTQRIAATIGVVKGIQFLHTGIVPGLYSNNLKITDIVLDNNHNVKISSYNLPLSSENKRMISNGTYPGLKGNVQARIKGEDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLHVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCVSDDLTERPSVEDILWNLQFAAQVQNSWKRDSSDHSYSPALSSRD 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00413 835 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Vian5g00413 835 SUPERFAMILY Protein kinase-like (PK-like) 515 810 IPR011009 -
Vian5g00413 835 Gene3D Phosphorylase Kinase; domain 1 497 619 - -
Vian5g00413 835 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 151 244 - -
Vian5g00413 835 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 511 619 - -
Vian5g00413 835 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00413 835 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 30 150 - -
Vian5g00413 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 81 808 - -
Vian5g00413 835 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 620 824 - -
Vian5g00413 835 SUPERFAMILY L domain-like 83 347 - -
Vian5g00413 835 Gene3D Ribonuclease Inhibitor 30 151 IPR032675 -
Vian5g00413 835 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Vian5g00413 835 Gene3D Ribonuclease Inhibitor 245 370 IPR032675 -
Vian5g00413 835 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 370 - -
Vian5g00413 835 Pfam Protein kinase domain 543 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00413 835 Gene3D Ribonuclease Inhibitor 152 244 IPR032675 -
Vian5g00413 835 Gene3D Transferase(Phosphotransferase) domain 1 620 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00413 Vian-Chr5 10591001 10595657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00413 473 833 Miscellaneous Gene Families AT3G03770 57.182 4.29e-133 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vian5g00413 Pkinase 3.5e-13 CL0016