Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00312 ATGGACCAGAACATCACAGTTCCAAGAATTCATGCATTCTCATCACCACCTTCCCCTCCCTTGTTTTCCTGCATCATTGCCCTTTCCATCGCAACACTGATTTTCATGTTCTTCTACGTTCTCTCACCCATTGTTTCAGCAGCCATTCTTCTAGCCCTTTGCATCACCACCCTCCTCCTTTCCAGGTTCACGCACAATCGTCAATTCACCCAAACATTCTCCTTTCACGCACACACTCCACCCAAAAACCAGAGGCTGGTCAAAATTTTCAATAACCTTTTCTGGGTCGTTGAAGAGAAAAGAAGTGGCCAAACGCAACAAGTCAAGAAGCTGCTTGGATCTATCGTATGCTTCGGAAACCAACCATTTGTGTCAGGGAGTGAATGTGCAATTTGCTTGGAAGAGTTCAAGAACGGAGAAGAGTGTGTTGAGTTTTCAGTTTGTGGGCACATCTTTCATTGTGATTGTATCAAACAGTGTTCAGTTAAGGTAGGAGGAACAACAATGGTGCACTCTCACCACCATCTTCTTCTCTTCTCTACACTTCCTTTCTCTCTCACCGCTCATCATAACCACCATTTATCACCGTCGCTTCACTTCCTCCACCGACCATCCACCCCAACATCTACCGTTTCAGCCATTCCTTCCGCCGCATGGCTTTCAGATCTCACAGCACAAGACTTTGGCCCCATTCAACTCCCTTTTTCCGCTCCTTCTTCTCTTCCCTTCTCAGATGACCCTTCCACCGTTCAGGTTGCTTCCACCGTGCTTCTCACCGGAGCCCTCACCGTCTTCTTCTTTCGCACCGTCCAGCGCCGGATTAAACGTGCCAAACAATTGAGATTTAGGTCTTCAGGAGCAGAGAAATCTATGGAAAAGTTGAAAAGAATGAAATCAAGTTCAATCAAAGTTAAGAATCCACCTTCAGCTGATCAAGCATTGTTAGGGGCAGTAATAGCAGGCGCCATTGCTGTTCTTCTCTATAGGTTCACCACTTCAATCGAAGCTTCTCTCAGTCGCCAAATGCTTTCAGATCATTTTTCGGACAATAATAAATGGGTTGTGCTACCTGGCTACATTTGTGTACGGCATAAACTCTGTGGGTCTGTTTCTTTATTCTGGGCAGCTTGCGATCGACACCATGGTGGGAGGGCCAATTGGAAATGA 1167 0.4619 MDQNITVPRIHAFSSPPSPPLFSCIIALSIATLIFMFFYVLSPIVSAAILLALCITTLLLSRFTHNRQFTQTFSFHAHTPPKNQRLVKIFNNLFWVVEEKRSGQTQQVKKLLGSIVCFGNQPFVSGSECAICLEEFKNGEECVEFSVCGHIFHCDCIKQCSVKVGGTTMVHSHHHLLLFSTLPFSLTAHHNHHLSPSLHFLHRPSTPTSTVSAIPSAAWLSDLTAQDFGPIQLPFSAPSSLPFSDDPSTVQVASTVLLTGALTVFFFRTVQRRIKRAKQLRFRSSGAEKSMEKLKRMKSSSIKVKNPPSADQALLGAVIAGAIAVLLYRFTTSIEASLSRQMLSDHFSDNNKWVVLPGYICVRHKLCGSVSLFWAACDRHHGGRANWK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00312 388 ProSiteProfiles Zinc finger RING-type profile. 129 159 IPR001841 -
Vian5g00312 388 SUPERFAMILY RING/U-box 128 160 - -
Vian5g00312 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 169 IPR013083 -
Vian5g00312 388 Pfam Protein of unknown function (DUF3082) 309 346 IPR021434 -
Vian5g00312 388 PANTHER OS02G0307800 PROTEIN 169 348 - -
Vian5g00312 388 Pfam RING-like zinc finger 128 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00312 Vian-Chr5 6847448 6853818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00312 31 158 C3H Transcription Factor Family AT5G41450 27.143 6.63e-06 44.3