Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00260 ATGGTGTTTGGCAAAGGGTTGCAGGGGCTAAGCGAGCCAGCTCGCTTAGCTTGGGAGAGCCACTATTCTATCTCTTGCTTGGTTTTGGACATATGTTTGAATGAGATTATGGTTATACGAAGTTCAAGGAGAATTCTTTTAAATGGTTATGTGTGCCAAGCTGCAAGTGGACAAAGACCTAGCCGACCCAGAGATTTCAACGATGCTGAGAACAAGGCCGTGGCAGCGGCGCATCCCACGTCAGAGAGGCTGGACGGAGCCGAGCCAGCCAGAGGCGGAGAGCGCGTGGCCGGAGACGAGGTGCGTGCGGCGGAGGAGGCCGAGGAAGAGTGCCATGACAGTGTCTACGATCTCCTCGGCGCGCGAGGTGTCGACGTGGACGAGCCGAAGGCCAAGGTCAACGGCAAGGGCAGAGTCGACGACGCGGTCGCCAGAGCCGAGGCAGAGGATGAGGTGGTAGGAACGGAGACGGCGCTGGGCGGCGCGCGGGAGGTAGGCGAGGGAGTGCAGGAGGACCGCGGCAACAGACTCGATCTTGCCTTCGGAGAGGATCAAAGACTAGCTTTGATCATACTTCTCTTAACCCTCACGTTCTCTTCTTCACTCTCTGACAATGGTGGCATTGCTGTGTACTGGGGCCAAGACGCTCGAGAAGGCAATTTGATAACCACGTGTAACAGTGGAAAGTACGCCATTGTGCTCCTCGCTTTCCTCAACCAGTTCGGTTCAGGGAGAATGCCAGCTGTCAACTTCGCCGGTCACTGCGATGCTTCATCGGGAAGGTGCGCCGAACTACAGCCCCAAATTAGTTACTGCCAGGAGAAAGGCATCAAGGTGCTCCTTTCAATTGGAGGAGCCTCTGGAGGGTACTGGCTGAGCTCGGCGGAGGACGCAAAGATCGTGGCAACCTACCTCTTCACCAACTTCCTCAGCGGCGAATACGGTCCACTTGGAGGCGTCATGCTGGACGGCATCGACTTCGACATCGAAAATGGAGAGAATTACTGGGACGATCTTGCAAGGGAACTCGATTTCTTACGGCAAACGACGGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGCCCAACAGACCCAATCAACTATCTCGACAAAGCCATCGCCACCAAACTCTTCGATTACATCTTCGTTCAGTTCTACAATAACCCTAGTTGCTCCTACACCAGTGGCACCGACGCCCTCTTGGAGTCCTGGGACAAGTGGGTCGACTTGGTAGCCTCCAACAACTCGCTCTTCTTGGGAGTGCCAGCAGCGTCCAGCGCTGGCGACGGTTACATTCCGCCGGAGGTCCTCAACGACGAGGTGCTTCCGCACGCGAAGGAAGCCTCCAACTACGGGGGAGTCATGCTGTGGAATAGATACCACGATGTTCAGAATGGCTACAGTGATAGCATACTATCCAATGTGATTAAGTCCAAGTTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCAGTAG 1485 0.5529 MVFGKGLQGLSEPARLAWESHYSISCLVLDICLNEIMVIRSSRRILLNGYVCQAASGQRPSRPRDFNDAENKAVAAAHPTSERLDGAEPARGGERVAGDEVRAAEEAEEECHDSVYDLLGARGVDVDEPKAKVNGKGRVDDAVARAEAEDEVVGTETALGGAREVGEGVQEDRGNRLDLAFGEDQRLALIILLLTLTFSSSLSDNGGIAVYWGQDAREGNLITTCNSGKYAIVLLAFLNQFGSGRMPAVNFAGHCDASSGRCAELQPQISYCQEKGIKVLLSIGGASGGYWLSSAEDAKIVATYLFTNFLSGEYGPLGGVMLDGIDFDIENGENYWDDLARELDFLRQTTGRYFYLSAAPQCPTDPINYLDKAIATKLFDYIFVQFYNNPSCSYTSGTDALLESWDKWVDLVASNNSLFLGVPAASSAGDGYIPPEVLNDEVLPHAKEASNYGGVMLWNRYHDVQNGYSDSILSNVIKSKLQVSVASVSDAIYQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00260 494 CDD GH18_hevamine_XipI_class_III 206 472 IPR045321 -
Vian5g00260 494 MobiDBLite consensus disorder prediction 56 95 - -
Vian5g00260 494 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 322 330 IPR001579 GO:0004553|GO:0005975
Vian5g00260 494 PANTHER ENDOCHITINASE 191 473 - -
Vian5g00260 494 FunFam Acidic endochitinase SE2 206 476 - -
Vian5g00260 494 SUPERFAMILY (Trans)glycosidases 203 472 IPR017853 -
Vian5g00260 494 Gene3D Glycosidases 204 491 - -
Vian5g00260 494 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 206 483 IPR001223 GO:0005975
Vian5g00260 494 Pfam Glycosyl hydrolases family 18 208 462 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00260 Vian-Chr5 5483966 5497271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00260 186 476 Glycoside Hydrolase AT5G24090 50.167 7.18e-95 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00260 5 5483966 5497271 Vian5g00260 5 5483966 5497271 ECH