Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00241 ATGCATTCCTCCGCCACTTCCCTCCGCCACCTTCCGCCGCTCAAGAGATTCCGACTCATTCAACAACAACAACAAACACACCAAAATCACTTTTCTGACTCTTCCCCTTTACCCGCCAAAAAACGCAGAGAATCGAGAACCCCTTCTCCTCCTTCCACCCTTCACAACTTCTCCCTCCCCGCCAAAAAACGAGTGTGGGCCCCACGCCCCCAAACTCCTCCTTCCTCAAACGACATCGTTTCCCCTCCCCAACCCTCCTCTGACGACGCCGCACCCCCCTTTGATCTCAACATCGAATACAACCCCAACCTCGGAGAATCCGAAAACAACGCGGCCGACGATGACGACGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGATCCTGCCGACCCAATCGTGTTCTGCGACGGGTGCGACCTCACGGTGCACGCCTCCTGCTACGGCCACCCTTTGTCGGAGGGAGTCCCCGACGGCGACTGGTTCTGCGAACGGTGTCGTGTCGGGGAAGGCAAGAGCGGCACGCGCTGCGCGCTGTGTCCCGCGAGTGAGGGCGCGATGAAGCGCACCGCGGACGGCGCGTGGGCGCACGTAGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGATCCGGAAGGGAGGGAGGGGATCGACTGCTCCATGGTTCCGAGGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTTGTGACGGTTGCGGTCTCGTGTGCTCCGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACATGCGCGCTGAAGGAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGGGCCACCATTGTTGCTGGCTTCTGCAAATCCCACACGCAGATTTGGGAAAAGCAACAGCAATCTGGGAAGTACAAGATTGTCCCTCTTGAAGATGAAAAGTAG 927 0.5825 MHSSATSLRHLPPLKRFRLIQQQQQTHQNHFSDSSPLPAKKRRESRTPSPPSTLHNFSLPAKKRVWAPRPQTPPSSNDIVSPPQPSSDDAAPPFDLNIEYNPNLGESENNAADDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSEGVPDGDWFCERCRVGEGKSGTRCALCPASEGAMKRTADGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPRKRWSQRCYLCECCDGCGLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGATIVAGFCKSHTQIWEKQQQSGKYKIVPLEDEK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00241 308 MobiDBLite consensus disorder prediction 22 109 - -
Vian5g00241 308 ProSiteProfiles Extended PHD (ePHD) domain profile. 175 287 IPR034732 -
Vian5g00241 308 SUPERFAMILY FYVE/PHD zinc finger 112 182 IPR011011 -
Vian5g00241 308 ProSitePatterns Zinc finger PHD-type signature. 120 167 IPR019786 -
Vian5g00241 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Vian5g00241 308 PANTHER PHD FINGER PROTEINS 108 287 - -
Vian5g00241 308 ProSiteProfiles Zinc finger PHD-type profile. 117 170 IPR019787 -
Vian5g00241 308 CDD PHD_BRPF_JADE_like 119 167 - -
Vian5g00241 308 Pfam PHD-finger 120 168 IPR019787 -
Vian5g00241 308 SMART PHD_3 119 168 IPR001965 -
Vian5g00241 308 SMART PHD_3 232 287 IPR001965 -
Vian5g00241 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 289 IPR013083 -
Vian5g00241 308 Pfam PHD-zinc-finger like domain 177 286 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00241 22 308 C2H2 Transcription Factor Family AT3G14740 47.416 5.41e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian5g00241 zf-HC5HC2H_2 1.9e-26 CL0390