Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00179 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCCTATTTTCCTCCCGACCAACCCCAGAAGTTTGCAAATGTTCATAGAATTTTTGGGGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGACCCTGTGTATGGCTGTGTTGGAGTCATATCACTCTTACAGCACCAACTTCGCCAGCTTCAAATGGATCTCTACTGCGCCAAATCTGAGCTCTCCAGGTACCAAAACCTAAGCAGCATCACCACCAATCACACCCTCATGGCCTCTGAATCTGCCGCAGCCTTCCACCACCACCACCACCAGAACAACAACACTGCTAACAGCTTTGGCCGAGACCATCACTACCACTTTCACCACCATCAGTTTTTTCCCAGAGACCAACACCAACAAGTAGCAAGAAGCTTTGATGGAGGCAACAACAACTACGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGTGGCGATGACCGCCACACTGCCAACCGCTCCTAG 648 0.5046 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSSITTNHTLMASESAAAFHHHHHQNNNTANSFGRDHHYHFHHHQFFPRDQHQQVARSFDGGNNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00179 215 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vian5g00179 215 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vian5g00179 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00179 Vian-Chr5 3584648 3585295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00179 2 215 AS2 family AT1G65620 61.009 1.70e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian5g00179 LOB 3e-42 No_clan