Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00146 ATGGGGAGTAGAACTACCGGAGGTTTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCATTTCCAATTCTAGTTATGCAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGTGCATTTGATCAGCCATATCGCGTAGAGGATGCTGTTGGCCTTAGTGGAAACCCAATTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTATCCGGGTTCTGTTCCCATTCATAGCCTTGATCAGTTGCCAACTTCGCTTGATAAAAGCCCATTGACGAATCAAACAGAGCTGCATAGGTTGCGATTACAGAAGGTTCAATCATCAAATCCTGACACTATATTAATTGGTAATACAGATAACCAGGAGGAGTCTGCCATGGCTGATGCCAGTCCCAGGACTGATATTTCTACAGATGTTGACACTGACGACAAGAATCAGCCGTTTGATAGAAATGAATCCCTTACTATTGTTTCTGACTCTAGTGACAGATCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCCTATGTCCAACAGTTAGAAAGCAGTCGCTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAACGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACACTAAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTGCGCATGATTGTTGATGGTATATTGGCGCATTATGATGAAATTTTTAGGTTGAAGGGTGTTGCAGCCAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTGACAGAACAGCAGCTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAACAGTCCCTTGCGGAGACATTGTCCACTGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGAACGCTTGAAGGATTCATTCGACAGGCCGATAATCTTCGCCAGCAGACTCTACAACAAATGCACCGAATTCTGACGACTCGCCAATCGGCTCGTGCCCTCCTTGCCATACACGACTATTTTTCGCGGCTGCGTGCTCTCAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1404 0.4594 MGSRTTGGFGVEDDKGAERGMPSFNSELPISNSSYAEGSTIDSFRVSDFGAFDQPYRVEDAVGLSGNPIYNSLKVSSQTIYPGSVPIHSLDQLPTSLDKSPLTNQTELHRLRLQKVQSSNPDTILIGNTDNQEESAMADASPRTDISTDVDTDDKNQPFDRNESLTIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00146 467 Coils Coil 258 278 - -
Vian5g00146 467 Coils Coil 201 228 - -
Vian5g00146 467 MobiDBLite consensus disorder prediction 146 160 - -
Vian5g00146 467 MobiDBLite consensus disorder prediction 170 184 - -
Vian5g00146 467 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351|GO:0043565
Vian5g00146 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Vian5g00146 467 Pfam Basic region leucine zipper 178 224 IPR004827 GO:0003700|GO:0006355
Vian5g00146 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Vian5g00146 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Vian5g00146 467 CDD bZIP_HBP1b-like 182 234 - -
Vian5g00146 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Vian5g00146 467 MobiDBLite consensus disorder prediction 1 33 - -
Vian5g00146 467 MobiDBLite consensus disorder prediction 113 184 - -
Vian5g00146 467 MobiDBLite consensus disorder prediction 113 142 - -
Vian5g00146 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Vian5g00146 467 FunFam BZIP family transcription factor 181 230 - -
Vian5g00146 467 Gene3D - 181 232 - -
Vian5g00146 467 PANTHER TRANSCRIPTION FACTOR TGA9 120 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00146 Vian-Chr5 2728077 2737692 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian5g00146 DOG1 7.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00146 5 2728077 2737692 Vian5g00146 5 2728077 2737692 ECH