Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00121 ATGGCTATGGCTTTAGAGACTCGGTTCCATGTTTTGGCTGTTGATGACAGTCTCATTGACAGAATGTTGATTGAGAGACTCTTGAAAACCTCTTCCTTCAATGTTACTACAGTTGATTCTGCTACCAAGGCCTTAAAGTTTCTTGGTTTGGTTGAAGATGAATTCAGGACTTTTGAATCTTCTGTTGCATCACAAATTCATCAGGATGTGGATGTTAACCTGATTATAACAGATTACTGTATGCCAGGAATGACTGGTTATGATCTGCTGAGAAAAATAAAGGAATCTAAATCACTTAAAAACATACCAGTTGTGATTATGTCCTCTGAGAATGTGCCATCAAGGATCAACAGATGTTTGGACGAAGGAGCAGAGGAATTCTTTCTGAAACCAGTTCAACAAGCAGATGTGAATAAGCTGAAGCCACATTTGATGAAATCAAGAACAAAAGAAGAGAATGAGCAACCATTGAATAACAAAAGAAAGGACATGGAAGAAATTTATTCTCCAAACAAAACCAGATTGAGATGTAGCAGTTAG 540 0.3741 MAMALETRFHVLAVDDSLIDRMLIERLLKTSSFNVTTVDSATKALKFLGLVEDEFRTFESSVASQIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKNIPVVIMSSENVPSRINRCLDEGAEEFFLKPVQQADVNKLKPHLMKSRTKEENEQPLNNKRKDMEEIYSPNKTRLRCSS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00121 179 MobiDBLite consensus disorder prediction 143 170 - -
Vian5g00121 179 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 158 IPR045279 GO:0009736
Vian5g00121 179 SUPERFAMILY CheY-like 8 146 IPR011006 -
Vian5g00121 179 Pfam Response regulator receiver domain 11 137 IPR001789 GO:0000160
Vian5g00121 179 CDD REC_typeA_ARR 11 140 - -
Vian5g00121 179 Gene3D - 10 176 - -
Vian5g00121 179 SMART REC_2 9 144 IPR001789 GO:0000160
Vian5g00121 179 MobiDBLite consensus disorder prediction 143 179 - -
Vian5g00121 179 ProSiteProfiles Response regulatory domain profile. 10 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00121 Vian-Chr5 2286901 2288224 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian5g00121 Response_reg 2.4e-19 CL0304