Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00116 ATGCATCATGGTGGGAACAAGTTCTGCGCTGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCGAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACACAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCATTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAGCGCTCTGAATATATTCGGAGAAAATATGAGTTCCAACAGTTTATGGGGTGTGATGACAATGTGGCAGGCCCCATTATCCCATCTCAAGGAAGAAGTGTATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTCTTATGGACAAAAAACCATCTGAAAGATTTCCAGGCAAAACTCGAATTGGGAATGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTTAGAGGCACTCACCTAGCTGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTAAATCCAGTGTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCTGCAAAGGCCTATGAGAAATCAAACATCAACGAATCCATGCAACTTGGTAAATTTGTGGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTGCAGAACATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTTACTCAATAG 1029 0.4043 MHHGGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEYIRRKYEFQQFMGCDDNVAGPIIPSQGRSVSLAQCSSSYYHALMDKKPSERFPGKTRIGNAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVRGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00116 342 SMART arf_gap_3 3 116 IPR001164 GO:0005096
Vian5g00116 342 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Vian5g00116 342 ProSiteProfiles C2 domain profile. 168 284 IPR000008 -
Vian5g00116 342 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 116 IPR001164 GO:0005096
Vian5g00116 342 CDD C2_ArfGAP 185 329 - -
Vian5g00116 342 SMART C2_3c 187 282 IPR000008 -
Vian5g00116 342 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 183 277 IPR035892 -
Vian5g00116 342 PRINTS HIV Rev interacting protein signature 6 25 IPR001164 GO:0005096
Vian5g00116 342 PRINTS HIV Rev interacting protein signature 46 67 IPR001164 GO:0005096
Vian5g00116 342 PRINTS HIV Rev interacting protein signature 25 42 IPR001164 GO:0005096
Vian5g00116 342 Pfam C2 domain 187 273 IPR000008 -
Vian5g00116 342 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 342 IPR044518 GO:0005096|GO:0005543
Vian5g00116 342 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 184 342 - -
Vian5g00116 342 CDD ArfGap 5 103 - -
Vian5g00116 342 Gene3D Arf GTPase activating protein 1 115 IPR038508 -
Vian5g00116 342 Pfam Putative GTPase activating protein for Arf 3 109 IPR001164 GO:0005096
Vian5g00116 342 FunFam stromal membrane-associated protein 1 isoform X1 1 114 - -
Vian5g00116 342 Gene3D C2 domain 185 342 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00116 Vian-Chr5 2204115 2207815 Dispersed/Wgd