Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00115 ATGGAGTCTCTAATTCTTCAACTTCATGAAATATCAGCTGTGAAATTTGGTAATTTCAAGCTGAAATCTGGCATATCCTCACCAATCTACATAGACCTCCGCCTTGTTATATCTTACCCTTCTGTCCTCCGGAATGTTTCTCAAACCCTCATTTCTTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTTCCCTTTGCCACCTGTGTCTCCGCTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAGTAAAAGATTATGGTACTTCTAAAGCCATTGAAGGTGATTTCAAGCAAGGTCAAAGTTGCTTGATAATTGAGGATCTAGTTACAAGTGGCACTTCAATTTTGGAAACTGCTGCCCCACTGCGTTCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGCGGGAAAGAGAATCTTGAGAATAACGGAATCAAGCTGCATGCAATTCTAAAGTTGACTGAAATGGTGAAAATTTTGAATGAAAAAGGAAAGCTTAATGAGCAGATGCTAGAGGTTGTTATGAGATTCTTAGAAGAGAATCAAAAGATTGTTGCTTTGGCAACAAGAACTAAGTTCAATGCCTTTCCATTATTGGAAAGGGCTAAATTGTCCAAGAATCCGACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATTTGTGTTTGGCTGCAGATGTTGCAACTGCTGCTGAATTACTTGAAATCGCTGACAAGGTTGGACCTGAGATATGCTTGCTGAAGACACATGTGGATATTTTACCAGATTTCACCCCTGATTTTGGTTCTAAGCTTCGCTCGATTGCAGAAAAACATAACTTCTTAATATTTGAGGATCGTAAGTTTGCTGATATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTTCCATATATTGGATTGGGCTGACATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTAGAAGGGCTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTTTTGCTGCTTGCTGAAATGAGTTCAAGTGGTAACCTTGCCAAGGGAGATTACATCACTGCTGCAGTGAAAATTGCTGAGGATCATTCTGACTTTGTCATTGGCTTCATCTCAGTCAATCCAGCATCATGGCCTGGAGCACCTGTAAATCCCTCTTTCATTCATGCAACGCCTGGAGTTCAAATGGTGATTGGTGGTGATGCTTTAGGGCAGCAATATAACACGCCATATTCTGTTATCTATGAAAGAGGTAGTGACATTATCATAGTGGGTCGTGGCATCATCAAGGCCAAAAATCCGAGTCATGCAGCTCGTGAATATCGTCTTCAAGGATGGAATGCATATTTGACCAAGTGCAGCTGA 1407 0.4215 MESLILQLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRNVSQTLISSVSSTSFDLVCGVPYTALPFATCVSATQNIPMVMRRKEVKDYGTSKAIEGDFKQGQSCLIIEDLVTSGTSILETAAPLRSAGLKVSDAVVLIDREQGGKENLENNGIKLHAILKLTEMVKILNEKGKLNEQMLEVVMRFLEENQKIVALATRTKFNAFPLLERAKLSKNPTGKRLFEIMAEKESNLCLAADVATAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSSGNLAKGDYITAAVKIAEDHSDFVIGFISVNPASWPGAPVNPSFIHATPGVQMVIGGDALGQQYNTPYSVIYERGSDIIIVGRGIIKAKNPSHAAREYRLQGWNAYLTKCS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00115 468 SUPERFAMILY Ribulose-phoshate binding barrel 211 464 IPR011060 -
Vian5g00115 468 FunFam Uridine monophosphate synthetase 207 468 - -
Vian5g00115 468 FunFam Uridine monophosphate synthetase 1 201 - -
Vian5g00115 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Vian5g00115 468 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Vian5g00115 468 CDD PRTases_typeI 59 166 IPR000836 -
Vian5g00115 468 NCBIfam orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Vian5g00115 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Vian5g00115 468 CDD OMP_decarboxylase_like 238 455 - -
Vian5g00115 468 Gene3D - 1 204 IPR029057 -
Vian5g00115 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Vian5g00115 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 467 - -
Vian5g00115 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Vian5g00115 468 Pfam Phosphoribosyl transferase domain 54 153 IPR000836 -
Vian5g00115 468 NCBIfam orotidine-5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Vian5g00115 468 Gene3D Aldolase class I 209 468 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00115 Vian-Chr5 2197177 2199902 Wgd