Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00114 ATGGCATCAAGTAATTTATTCTTTGATGATATACGGAGCAAAGTTGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGGACAAACTACACTTAAACCTAATGGTACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAGCATGAATCACAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCTCATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGCACTTTCAACCATCGCTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGTTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTCATGGGTGATGATAATGAAGCAAAGAATTATAGCTATAGTTTAGAGGTAGGTGGGAATGGGAGGAAGATGATTTGGCAGGGTGTGCCAAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGAAATATGGCCCTTTTCTTTTCTGGCGGTGACAGGAAGGAGTTGAAGTTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 915 0.423 MASSNLFFDDIRSKVDVDPPQNEESTDVGELVNDPGQTTLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00114 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 303 - -
Vian5g00114 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Vian5g00114 304 SUPERFAMILY TRAF domain-like 109 301 - -
Vian5g00114 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Vian5g00114 304 SUPERFAMILY RING/U-box 48 96 - -
Vian5g00114 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Vian5g00114 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Vian5g00114 304 MobiDBLite consensus disorder prediction 26 40 - -
Vian5g00114 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Vian5g00114 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Vian5g00114 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 108 IPR013083 -
Vian5g00114 304 CDD RING-HC_SIAHs 54 92 - -
Vian5g00114 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vian5g00114 304 MobiDBLite consensus disorder prediction 13 40 - -
Vian5g00114 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Vian5g00114 304 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00114 Vian-Chr5 2194364 2196084 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00114 5 2194364 2196084 Vian5g00114 5 2194364 2196084 ECH