Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00103 ATGACAACAATGTCACTTTCCTCAACCCTAGTTCTTATTCTGCTGTCTCTTCACAGCATCTCTTCCTTAGATGCTCACAAAGATGGGTTCAGTGTGGAAATCATCCACCGTGACTCATCAAAATCACCGTTGCATCGTCCCACAGAAACTCAATTCCAACGAGTTGCTAATGCAGTGGGTCGTTCCATTAATCGTGCCAATCATTTCAACCAAAACACACCTAAGGCCAATATAACACGAGATGATGGTGAATACCTTTTGAGCTATTCAGTTGGAACCCCACCATTTCAAGTTTATGGTATTGCTGATACAGGAAGTGACATAACTTGGTTGCAGTGTAAACCTTGTAAACCCTGTTACAACCAAACCAGTCCAATGTTTGACCCTTCAAAATCCAGCACATACAGAATCCTTTCTTACTCTTCTAAAATATGTAAATCAGTGAAAGGTACCACTAAAGATGGAGACCATTGTGAATATACCATTTCCTATGGTGATGGGTCAAAGTCACAAGGAGATCTTAGTGAGGAGATCCTCACTTTAGACTCCACCAATGGCTCTTCAATCCAATTTCCAAGAACTGTCATAGGATGTGGACGAAGGAACACTGTGTCCTCTGAAGGGAAGGCCTCTGGTGTAGTTGGCCTTGGAAGAGGACCTGTGTCCTTGATATCTCAATTGGGTTCTTCAATTGGTGGAAAATTTTCCTATTGTTTGGCACCAACGTCTAATACTTCTAGCAGACTCAATTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTGTATCAACTCCAATATTCTCACGTGGAGCAGTATTTTACTACCTAACATTGGAAGCATTCAGTGTTGGAAACAAGACAATACAGTTAGGAAGCTCCTCGTCTGAATCTGATGGAGAGGGAAATATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAGATGATGTTTACTCAAAGCTGGAATCAGCAGTGGCACATGAAGTTAAGTTAAAACGTGTTAAGGGTCCGTTGAGCCTTTGCTTTGAAAGCAGTTTTCATGATCTGAAAGCACCAGTGATCATGGCACATTTTAGAGGCGCAGATGTGAAGTTAAATGCTGTCAACACATTTGTTGAAGTGGACGAAAGGGTAGTGTGCTTCGCTTTCGTGCCAAGTAACCTTGCCATCTTTGGGAACATGGCTCAGATGAACCTTTTGGTTGGCTATGACCTAGAAAAGAAAAGAGTCTCCTTCAAACCCACAGACTGTACTAACCAGTGA 1269 0.4232 MTTMSLSSTLVLILLSLHSISSLDAHKDGFSVEIIHRDSSKSPLHRPTETQFQRVANAVGRSINRANHFNQNTPKANITRDDGEYLLSYSVGTPPFQVYGIADTGSDITWLQCKPCKPCYNQTSPMFDPSKSSTYRILSYSSKICKSVKGTTKDGDHCEYTISYGDGSKSQGDLSEEILTLDSTNGSSIQFPRTVIGCGRRNTVSSEGKASGVVGLGRGPVSLISQLGSSIGGKFSYCLAPTSNTSSRLNFGDAAVVSGKGTVSTPIFSRGAVFYYLTLEAFSVGNKTIQLGSSSSESDGEGNIIIDSGTTLTLLPDDVYSKLESAVAHEVKLKRVKGPLSLCFESSFHDLKAPVIMAHFRGADVKLNAVNTFVEVDERVVCFAFVPSNLAIFGNMAQMNLLVGYDLEKKRVSFKPTDCTNQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00103 422 ProSiteProfiles Peptidase family A1 domain profile. 85 415 IPR033121 -
Vian5g00103 422 CDD pepsin_A_like_plant 84 419 IPR034161 -
Vian5g00103 422 Pfam Xylanase inhibitor C-terminal 275 415 IPR032799 -
Vian5g00103 422 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 304 315 IPR001969 GO:0004190|GO:0006508
Vian5g00103 422 Gene3D Acid Proteases 63 251 IPR021109 -
Vian5g00103 422 Gene3D Acid Proteases 252 422 IPR021109 -
Vian5g00103 422 PANTHER OS07G0603500 PROTEIN-RELATED 32 420 - -
Vian5g00103 422 FunFam Aspartic proteinase CDR1 254 422 - -
Vian5g00103 422 FunFam Probable aspartic protease At2g35615 64 252 - -
Vian5g00103 422 SUPERFAMILY Acid proteases 81 419 IPR021109 -
Vian5g00103 422 Pfam Xylanase inhibitor N-terminal 85 253 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00103 Vian-Chr5 1843278 1844546 Dispersed/Transposed