Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00100 ATGGCTACCCTCATTGCTCCCATCACTTTTTCACCTGGTGCAGATGCAGAGGCTCTTCACAATGCTTTCAAAGGATGGGGGACTGATGAGAAAACTGTTATTGCAATATTGGGTCACAGAAATGTTTATCAGAGGCAACAAATCAGAAAGCTTTATGAAGAAATGTACCAAGAAGACCTTGTCAAACGCCTAGAGTCTGAACTAACTGGTGACTTTGAGTATAGCCTCAAGAGTACTAATGATTTTGAATCATGGGGTCTGAACAAAACAATAAAACAGAGATCAGTGTATCGTTGGATGCTGGAACCTGCAGATCGTGATGCTGTTTTGGCCAATGTGGCAATCAAGGATGGCAGCAAGGGCTATCATGTGATTGTGGAGATTGCTTGTGTGCTTTCATCTGAAGAACTTTTGGCAGCTAGACGTGCCTATCACCACCGTTACAAACGATCTTTGGAAGAAGATGTAGCTGCTAATACCTCTGGTGATCTTCGTCAGCTGTTGGTTGGGTTGGTGACCTCATATAGGTATGGTGGTGATGAGATCAATGCAAGATTGGCAAAAACTGAATCTGATATTCTTCATTCATCTATCAAAGAGAAAAAGGGAAACCATGAAGAAGCCATTAGGATCCTTACCACAAGGAGCAAGACTCAACTTCTGGCAACTTTCAACCGCTACAGAGATGATCATGGCGCTTCCATAACTAAGAAATTGTTAGATGATGCATCTGATGATTTCAGGAAGGCATTGCACACTGCTATTAGATGTATCAATGACCACAAAAAGTACTATGAAAAGGTTCTGCGCAATGCAATCAAAAGGGTTGGAACTGATGAGGATGCACTGACCCGTGTGGTGGTTTCAAGAGCAGAGAAGGACCTGAGGAACATTGCAGAGCTCTATTACAAGAGAAACAGTGTTCATCTTGAGGATGCAGTGGCCAAGGAAATCTCAGGGGACTACAAGAAATTCATCCTCACTTTGTTGGGGAAGGATGTTTGA 1005 0.4279 MATLIAPITFSPGADAEALHNAFKGWGTDEKTVIAILGHRNVYQRQQIRKLYEEMYQEDLVKRLESELTGDFEYSLKSTNDFESWGLNKTIKQRSVYRWMLEPADRDAVLANVAIKDGSKGYHVIVEIACVLSSEELLAARRAYHHRYKRSLEEDVAANTSGDLRQLLVGLVTSYRYGGDEINARLAKTESDILHSSIKEKKGNHEEAIRILTTRSKTQLLATFNRYRDDHGASITKKLLDDASDDFRKALHTAIRCINDHKKYYEKVLRNAIKRVGTDEDALTRVVVSRAEKDLRNIAELYYKRNSVHLEDAVAKEISGDYKKFILTLLGKDV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00100 334 FunFam Annexin 102 172 - -
Vian5g00100 334 Gene3D Annexin 262 332 IPR037104 GO:0005509|GO:0005544
Vian5g00100 334 SMART annex3 119 171 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 SMART annex3 277 329 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 SMART annex3 202 254 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 ProSiteProfiles Annexin repeat profile. 102 173 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 ProSiteProfiles Annexin repeat profile. 185 256 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 Gene3D Annexin 1 77 IPR037104 GO:0005509|GO:0005544
Vian5g00100 334 SUPERFAMILY Annexin 3 333 IPR037104 GO:0005509|GO:0005544
Vian5g00100 334 FunFam Annexin 185 259 - -
Vian5g00100 334 Gene3D Annexin 102 173 IPR037104 GO:0005509|GO:0005544
Vian5g00100 334 PANTHER ANNEXIN 12 329 - -
Vian5g00100 334 FunFam Annexin 261 332 - -
Vian5g00100 334 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 ProSitePatterns Annexin repeat signature. 277 329 IPR018252 GO:0005509|GO:0005544
Vian5g00100 334 PRINTS Plant annexin signature 245 263 IPR009118 -
Vian5g00100 334 PRINTS Plant annexin signature 180 200 IPR009118 -
Vian5g00100 334 PRINTS Plant annexin signature 138 152 IPR009118 -
Vian5g00100 334 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Vian5g00100 334 PRINTS Annexin family signature 273 293 IPR001464 GO:0005509|GO:0005544
Vian5g00100 334 PRINTS Annexin family signature 317 330 IPR001464 GO:0005509|GO:0005544
Vian5g00100 334 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Vian5g00100 334 Gene3D Annexin 185 259 IPR037104 GO:0005509|GO:0005544
Vian5g00100 334 FunFam Annexin 9 78 - -
Vian5g00100 334 Pfam Annexin 267 329 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 Pfam Annexin 112 171 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 Pfam Annexin 192 252 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 Pfam Annexin 15 75 IPR018502 GO:0005509|GO:0005544
Vian5g00100 334 ProSiteProfiles Annexin repeat profile. 260 331 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00100 Vian-Chr5 1764377 1766947 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00100 5 1764377 1766947 Vian5g00100 5 1764377 1766947 ECH
Vian11g01629 11 26956342 26958231 Vian5g00100 5 1764377 1766947 PCT