Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00085 ATGGAATCCCCCGTTGATGTTGTGCCAGCTGCAAAACGCCCCCGATCAATGGGATTTTTTCCTGACCCTGGTAGAGACAAAAGACTGAAAATTTCAAGTTATAGCCTGCCATACTCAGCACATGATAAGACTTCGAATGTTGTTGATTACAACAATCCATTTGCAATATCTGATGTTCTGGATAATTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAAGACCTTATAGCCCAAAAAATGAAAATATTGGGCCCTTACTTTGTTAAATATCCCATACTTGTGGATCAATGGGTGAAAGCAATAAAGAAACATGATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTTTCGACGGATCAAAATGTTATAGATCTTGAGGAGGAACACACCAGAAAGGATGTCCCTGCAACACAAGATCCTATTGTGATTATTGATTCGGATGATGAAGATGATGGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGACACTAGTTGCACCGTCTCCTGCATTGAAGATAACTGGGTATCTACCTGCCATTCCTTACCTGGAAGAAAGAGATCTAATAATTGAGACAAGTATGGAGGATAAACCTAACAATACTCAGAACGATAGAGGCAGTTATGTTGGTGTACAGGAAGAGGAAGAAGACGAGCTTGATACTGAAGATGACGGTCTAGGAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTTGATCTCCAGCCAGATGAAGAAGCAGAAGAAGACTATGATGATGATGATTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGGCCGGGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGCAGCACAAGAACTTATGCATCTGATTCATGGAATACCAAGAAAACAGATGCATTTGGAATTAATGTTGTTAAAGATGACCTCGTAGTTACTGAAATCCCAGCACACCCTAGACACATGAAACAGATGAAGCCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGAACATACCTCTATATGACTTCTACACAGTGAAGGCAGACAGTAGAAGTCAACAACTTGAAGTGCTGAATCAATGGAGGGAGAAGAAGAGTATTCTTTTCTTAGGATACAAACAGTTCTCCACTATTGTCTGTGATAATGGGAACGATATATCATTACGTTGCCAAGATATTTTACTGAAAGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATACTACAGTCTCTTGTAAAAGTTGAGACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAAGGAGGTGTTTAACATTCTAGATCTTGTTCGGCCGAAATTTTTGAAGATGGAAACATCAAAACCTATTGTGAGGCGCATCCAAAGTAGAGTTCATATACCAGGGATGAAAGGATTCTCTAATTTAGTTGAAAACACTTTGCAGCAGGACACAGATTTTAAAACGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTAGTGGATTTTACTTTAATGCTCACTCTTAGCCCTAGCCAGAAGACCGAAGTAGCAAAAATAAAAAAACAATCTACAAGAAAGTTCAAGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCGCTAGCAGAAAATAATTGTGGTAAAACTCCTATATCTGATCGTGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATCACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCCTTGAAATATTTAGAAAGGTTGACTATTAACTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGATTCAACTCCTGAGCACCGAGAATGGTCCATGGAAAAATTCAACAATTCTCGTGAAGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGGGCCTCCCGCATAATTATCTTGGACGTTCATCTCAATCCATCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGAAGAAGAAGGTGTTTGTGTATCGTTTAGTATCTGCTGATTCTCCAGAAGAAGAAGATCACCATGCTTGTTTCAAGAAAGAACTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGAGATGAATTTCTTGAAAGTCCTCTGTTAGGGGAGAATGTAAAAGCTTTATATAGAAGAAATATTTTGGACAAAATGATTTCATAG 2670 0.3891 MESPVDVVPAAKRPRSMGFFPDPGRDKRLKISSYSLPYSAHDKTSNVVDYNNPFAISDVLDNLESGKFGSVTKDIEDLIAQKMKILGPYFVKYPILVDQWVKAIKKHDEETPKLENQLVTVSTDQNVIDLEEEHTRKDVPATQDPIVIIDSDDEDDGDEKSMVPFHEVVLPTLVAPSPALKITGYLPAIPYLEERDLIIETSMEDKPNNTQNDRGSYVGVQEEEEDELDTEDDGLGDIWKEMSMAIECSKDVSVDLQPDEEAEEDYDDDDCDHSFVLKDDLGYVCRVCGVIGRGIETIFEFQYKVKRSTRTYASDSWNTKKTDAFGINVVKDDLVVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVENIPLYDFYTVKADSRSQQLEVLNQWREKKSILFLGYKQFSTIVCDNGNDISLRCQDILLKVPSILILDEGHNPRNENTDILQSLVKVETPRKVVLSGTLYQNHVKEVFNILDLVRPKFLKMETSKPIVRRIQSRVHIPGMKGFSNLVENTLQQDTDFKTKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTLMLTLSPSQKTEVAKIKKQSTRKFKISSVGSAVYLHPKLKPLAENNCGKTPISDRVMDDLVDKLDIRDGVKSKFYHNMLNLCESAGEKLLVFSQYLLPLKYLERLTINWKGWSLGREIFVISGDSTPEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHHACFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGENVKALYRRNILDKMIS 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00085 889 Pfam SNF2-related domain 369 647 IPR000330 GO:0005524|GO:0140658
Vian5g00085 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 543 IPR027417 -
Vian5g00085 889 SMART ultradead3 345 554 IPR014001 -
Vian5g00085 889 Gene3D - 611 864 IPR027417 -
Vian5g00085 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 843 IPR027417 -
Vian5g00085 889 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
Vian5g00085 889 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 213 881 IPR044567 GO:0080188
Vian5g00085 889 MobiDBLite consensus disorder prediction 205 232 - -
Vian5g00085 889 Gene3D - 317 566 IPR038718 -
Vian5g00085 889 Pfam Helicase conserved C-terminal domain 697 804 IPR001650 -
Vian5g00085 889 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 541 IPR014001 -
Vian5g00085 889 SMART helicmild6 720 805 IPR001650 -
Vian5g00085 889 CDD SF2_C_SNF 694 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00085 Vian-Chr5 1508678 1515445 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian5g00085 SNF2_N 1.7e-18 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00085 5 1508678 1515445 Vian5g00085 5 1508678 1515445 ECH