Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian5g00080 | ATGCACATCAAGGAGGTTTGCTTGGAAGGGTTCAAGTCATACGCTACGCGCACCGTTGTTTCGGGCTTCGACCCCTTCTTCAACGCCATCACTGGCTTGAACGGTTCAGGCAAATCGAACATTCTCGATTCCATCTGCTTCGTTCTTGGCATCACCAATTTGCAGCAGGTTAGGGCTTCCAACCTCCAGGAACTCGTCTACAAGCAGGGTCAGGCCGGAATCACCAAAGCAACCGTCTCCATCGTCTTCGACAACTCCGACCGGTCGCGAAGCCCTCTCGGTTACGAAGGCCATCCCGAGATCACAGTAACAAGACAGATTGTGGTAGGGGGAAGGAACAAATATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCATTCAGTGCAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGGATCACTAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCCATGCTTGAGGAAGCTGCGGGGACGAGAATGTACGAGACAAAGAAAGAGGCTGCTTTAAAAACACTTGAGAAGAAGCAGAGCAAGGTTGACGAGATTAACAATCTTCTTGATCAGGAAATACTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGAAATGCTGAGTTAGATAGGCTGAGAAGGTTCTGTGTTGCTTATGATTATGTTCAAGCGGAGAGGATTAAAGACAATGCTGCTTCGGAGGTGGAGGGAGTGAAAGGCAAGATAGCTGAGATTGATGATGCTGTTAAGACAAATCAGGTGGAAATAAAGGAAATGGAGGCCAAAATAGCTCAGTTGTCTGCTGAAAAGGAAGCTAGCATGGGTGGAGAAATGAAATCTCTCTCAGAGAAGGTAGATGCGCTTTCACAGAATCTTATTGTTAAAAACATTGAAGAGCTGAAGCAATCTGTAGACGAGAAGGCGTCTGCTGTTAAAAAGGCTGAAGAGGGGGCATCAGGTCTGAAAAATAAAGTTGAGGAGCTTACAAATAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTGTTTTAGCCGGCAAAAGCAGTGGTAATGAGGAGAAGTGCTTGGAGGATCAACTAAGGGATGCAAAGGTAGCAGTCGGGAATGCTGAGACAGAATTGAAACAACTGAAAGCCAAGATTAGCCATTGTGAAAAGGAACTGAAGGAAAAAACAAATCAATTAAAGTCAAAACGTGAAGAAGCTAATGCTGTCGTAAAAGAGCTCAACTCCAGACAAAAAGATGTGGAGAATATAAGAACTGGGTTGGAATCTCTCTCATATAAAGAGGGTGAGATGGAGGATTTACAAAAGGAGCGTACGACTGAGATGGACTGTGTGCAAAAGTGGAAGGATGAGATACGCAATCTTTCAGCTTACCTGGCTAATGTTGAATTTACTTACCGTGATCCTGTCATGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTCACAGCTGGTGGGAAGTTGTATAATGTTGTTGTTGACACAGAAAAAACTGGGAAGCAGCTACTACAAAATGGAAATCTTAGAAGAAGAGTGACAATTATACCTCTGAACAAAATACAATCCCATCCCGTTCCCTCAAGAGTTCAACAAGCTGCTGTTAGACTGGTGGGGAAGGGGAATGCTGAAGTGGCCCTTTCTTTGGTTGGTTATGAAGAAGAATTAAAGAGTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTTGCATTTAATAGGGACATTTACACAACAAGTGTCACTCTTGAAGGAGATATATTTCAACCAAGGGGTCTTCTGACTGGTGGGAGCAGGAAGGGAAGTGGTGATCTTTTGGGACGACTTCATGCTTTGGCTGAGGCCGAGTCAAAACTTTCAGTGCATCAAAGAAGGTTGTCAGAGATCGAGGCAAAGATCTCAAAGCTTCTTCCGCTTCAGAAAAAGTTTATAGATCTCAAAGCACAATTAGAACTGAAGTCGTACGACCTTACATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTAAATGAAGCAAAATCGACAATCATGGACAAGCAACTTTTGTATGAGGACTGCGTCAAAACTGTTTCATCTCTTGAGAATTCAATAAAAGACCATGACATAAACAGAGAAAGTAGACTAAAAGGATTGGAGAAAAAGATAAAATCTATAAAATCTCAAATGCAGTCATCTTTAAAAGATCTGAAGAGGCATGATAGTGAAAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATCCAGGAGCAAGCATCCCTGGAGAATCAGTTAGCATCATTGGGAGCGCTGATAAGCAATCTTACCTCCGATGTAGAGCAGCAAAAATTCAAAGTTGTTGCTGCACGGGATAACCTGGATCAAGTTCAATCAGAGCTGAAATCAGTTAGCCTGAAAATGAAAGAACGTGATAAGGAAATCAGTGCTATCATTAAAGAGCAAGAAAAACTTGAACATAAAATTACTGAGAGTAATCTAGAAAGGAAGAAGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGATTGCTCTGTCAGAGTAGATAAATTAATTGAGAAGCATGCTTGGATTGCTTCTGAAAAACAATTGTTTGGTAGAAGTGGGACAGATTATGATTTTTCTTCCTGTGATCCAAGTAAATCAAGGGAACAGCTTGAGAAGCTTCAGGCTGAGCAATCTGGACTTGAGAAAAGGGTGAATAAGAAAGTGATGGCAATGTTTGAGAAGGCAGAGGACGAGTACAATGATTTGATGTCAAAAAAATATATAATTGAGAATGACAAGTCCAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTAAATAAGGACTTTGGGTCTATCTTTTCTACACTATTACCGGGAACAATGGCTAAACTAGAACCTCCAGAAGGATGCAGCTTCCTTGACGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAGCAGTCGTTGTCTGAATTAAGTGGAGGTCAGCGATCGCTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCCGCTCCACTTTACATCCTTGACGAGTTAGAACTTAGTGATATGTCAACCTCAGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCATTTTCCACACTCTCAGTTTATTGTGGTTTCCTTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTAGATGGTGTTTCAACTGTTCAGCGAACAGTTGCTTCTAAACAAAGCAAATGA | 3492 | 0.4172 | MHIKEVCLEGFKSYATRTVVSGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEGHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKEKTQYMQWANGNAELDRLRRFCVAYDYVQAERIKDNAASEVEGVKGKIAEIDDAVKTNQVEIKEMEAKIAQLSAEKEASMGGEMKSLSEKVDALSQNLIVKNIEELKQSVDEKASAVKKAEEGASGLKNKVEELTNSLEEHEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGNAETELKQLKAKISHCEKELKEKTNQLKSKREEANAVVKELNSRQKDVENIRTGLESLSYKEGEMEDLQKERTTEMDCVQKWKDEIRNLSAYLANVEFTYRDPVMNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLYNVVVDTEKTGKQLLQNGNLRRRVTIIPLNKIQSHPVPSRVQQAAVRLVGKGNAEVALSLVGYEEELKSAMEYVFGSTFVCKTIDAAKEVAFNRDIYTTSVTLEGDIFQPRGLLTGGSRKGSGDLLGRLHALAEAESKLSVHQRRLSEIEAKISKLLPLQKKFIDLKAQLELKSYDLTLFQSRAEQNEHHKLGELVKKIEQELNEAKSTIMDKQLLYEDCVKTVSSLENSIKDHDINRESRLKGLEKKIKSIKSQMQSSLKDLKRHDSEKERLVMEMEAVIQEQASLENQLASLGALISNLTSDVEQQKFKVVAARDNLDQVQSELKSVSLKMKERDKEISAIIKEQEKLEHKITESNLERKKMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSCDPSKSREQLEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKYIIENDKSKIKKVIEELDEKKKETLNVTWIKVNKDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDELELSDMSTSEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVASKQSK | 1163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian5g00080 | 1163 | PIRSF | SMC | 1 | 1143 | IPR024704 | GO:0005524|GO:0016887 | |
| Vian5g00080 | 1163 | Coils | Coil | 178 | 198 | - | - | |
| Vian5g00080 | 1163 | Pfam | RecF/RecN/SMC N terminal domain | 2 | 397 | IPR003395 | - | |
| Vian5g00080 | 1163 | Coils | Coil | 315 | 363 | - | - | |
| Vian5g00080 | 1163 | FunFam | Structural maintenance of chromosomes 2 | 495 | 558 | - | - | |
| Vian5g00080 | 1163 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 | 1 | 1161 | - | - | |
| Vian5g00080 | 1163 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 1139 | IPR027417 | - | |
| Vian5g00080 | 1163 | Coils | Coil | 869 | 905 | - | - | |
| Vian5g00080 | 1163 | CDD | ABC_SMC2_euk | 1 | 156 | IPR027120 | GO:0005524|GO:0016887 | |
| Vian5g00080 | 1163 | Gene3D | - | 554 | 644 | - | - | |
| Vian5g00080 | 1163 | Gene3D | - | 972 | 1162 | IPR027417 | - | |
| Vian5g00080 | 1163 | Pfam | RecF/RecN/SMC N terminal domain | 846 | 1148 | IPR003395 | - | |
| Vian5g00080 | 1163 | FunFam | Structural maintenance of chromosomes 2 | 1 | 202 | - | - | |
| Vian5g00080 | 1163 | Coils | Coil | 260 | 287 | - | - | |
| Vian5g00080 | 1163 | FunFam | Structural maintenance of chromosomes 2 | 972 | 1161 | - | - | |
| Vian5g00080 | 1163 | Pfam | SMC proteins Flexible Hinge Domain | 495 | 615 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Vian5g00080 | 1163 | Coils | Coil | 656 | 676 | - | - | |
| Vian5g00080 | 1163 | Coils | Coil | 766 | 814 | - | - | |
| Vian5g00080 | 1163 | SUPERFAMILY | Smc hinge domain | 456 | 663 | IPR036277 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Vian5g00080 | 1163 | Coils | Coil | 370 | 436 | - | - | |
| Vian5g00080 | 1163 | Coils | Coil | 983 | 1003 | - | - | |
| Vian5g00080 | 1163 | Coils | Coil | 959 | 979 | - | - | |
| Vian5g00080 | 1163 | Gene3D | - | 495 | 656 | - | - | |
| Vian5g00080 | 1163 | Gene3D | - | 1 | 202 | IPR027417 | - | |
| Vian5g00080 | 1163 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 290 | 466 | IPR027267 | - | |
| Vian5g00080 | 1163 | SMART | SMC_hinge_2 | 495 | 615 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Vian5g00080 | 1163 | Coils | Coil | 713 | 740 | - | - | |
| Vian5g00080 | 1163 | Coils | Coil | 829 | 863 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian5g00080 | Vian-Chr5 | 1457421 | 1469832 | Dispersed |