LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00078	ATGCCAGGAAAACCTGACTGTGATGATTACGGTGAGCAGATTCAGTTTCATCCTTGGTGGCGCGCAATTGGAGAAAATGCCTCCAAATCATCTTCAGCTGATCGGTTAAATGGTTCTCCTTCACTGCCTGAAACTGATAAGACAGGTGGTAAAGAGTACCAAAACATCAAACATGACTTGTCTTCAATCTCATTTAGCATGGACAAATACCTTGCTCCCAATCCTCACACAGAATTTGTTGGTCATTCAGTTGTTTTGACATCTTATTCAGATGCACAGTATGGTCAAATATTGACTACTTATGGGCAACAAGTTATGATAAACCCTCCATTGTATGGAATGCATCAAGCTAGAATGCCTTTGCCACTCGAAATGGAAGACGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCCGAGCTTGAAAAGAAAGTAATCAGAAACAGAAAGCCATACCTGCACGAATCTCGTCACCTACACGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTCAACACAAAGAAGCTTGAAAATAACAGTTCTAGTGTCACTTCTGACGAAGGCAACAATAGTGGTGCAAACCCCTCAGCAAACTCATTTAACACTCTGCATAGGCTCACCAACAATGAGAATCTAGCCTCATCAAACATGGTTCAGGACATGCACAGAGTTCAGAGTTTCAACAATGGTTACCATAATGGAAATTGTCTTACAGCACTATACCTTTCACAAGTGAATGGAAAAAAGGAGGGAGGAGACTACTTTGGAAAAGAGAGAGACCCTCTTGGGGCTTTCAAATAG	840	0.425	MPGKPDCDDYGEQIQFHPWWRAIGENASKSSSADRLNGSPSLPETDKTGGKEYQNIKHDLSSISFSMDKYLAPNPHTEFVGHSVVLTSYSDAQYGQILTTYGQQVMINPPLYGMHQARMPLPLEMEDEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNSSSVTSDEGNNSGANPSANSFNTLHRLTNNENLASSNMVQDMHRVQSFNNGYHNGNCLTALYLSQVNGKKEGGDYFGKERDPLGAFK	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00078	279	MobiDBLite	consensus disorder prediction	29	44	-	-
	Vian5g00078	279	PRINTS	CCAAT-binding transcription factor subunit B signature	129	151	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	PRINTS	CCAAT-binding transcription factor subunit B signature	160	183	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	SMART	cbf3	125	186	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	MobiDBLite	consensus disorder prediction	185	214	-	-
	Vian5g00078	279	ProSiteProfiles	NF-YA/HAP2 family profile.	126	186	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	MobiDBLite	consensus disorder prediction	29	52	-	-
	Vian5g00078	279	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	128	183	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	37	240	IPR001289	GO:0003700\|GO:0006355
	Vian5g00078	279	MobiDBLite	consensus disorder prediction	177	214	-	-
	Vian5g00078	279	ProSitePatterns	NF-YA/HAP2 subunit signature.	131	151	IPR018362	GO:0003677\|GO:0016602
	Vian5g00078	279	Gene3D	-	126	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00078	Vian-Chr5	1440569	1443424	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Vian5g00078		CBFB_NFYA	2.6e-26	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian5g00078	5	1440569	1443424	Vian5g00078	5	1440569	1443424	ECH