Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00072 ATGGAGTCTGAAGGCGAAGCTGGGGCAAAGCCAGTGACAGCATTGAGTGCCCAAGTGTGCCAGATATGTGGTGATGGTGTTGGGAAGAATGTGGATGGTGAACCATTCATTGCGTGCGATGTTTGTGCTTTCCCTGTATGCAGACCCTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGTCCCCAGTGCAAAACCCGGTACAAGAGGCACAAAGGGAGTCCTGCAATTCTTGGAGACACGGAAGAGGATGGTGCTGCTACTGATGGTGCCAGTGACTTTAATTACGACTCAGACACTCAACACCAAAAGCAGAAGATTTCAGAGCGCATGTTAAGCTGGCAATTGACTTATGCACGAGGAGAGGAGGTCGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAACCATATTCCTCTGTTGACCAGTGGACAAGAGGTGTCTGGAGAGTTGTCTGCAGCCTCACCTGAGAGGCTCTCAATGGCATCTCCTGCAGCTGGTGGAGGAAAACGTGTTCATAATATTCCATATTCATCTGATATTAATCAATCTCCTAATGTCAGGGCTGGGGATCCAGGTTTGGGTAATGTTGCATGGAAAGAAAGAGTTGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCTATGAGCACCGGCCAAGCTGCTTCTGAGAGAGGAGCTGGAGATATTGATGCTACTACTGATGTGCTTGTGGATGATTCCTTGTTGAACGACGAAGCTCGACAACCTCTTTCTAGGAAGGTTTCGATTCCATCATCTAGGATAAATCCATATCGTATGGTCATTATGTTGCGGCTGGTTATCCTTTGCATTTTCTTGCATTATCGGATAACGAATCCAGTGCCGAATGCATATCCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATGTCTTGGATATTGGATCAATTCCCCAAGTGGCTTCCTGTCAACCGTGAAACATATCTTGACAGGCTTGCATTGAGGTATGATAGGGAAGGAGAACCTTCACAACTAGCTGCCGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAGGAACCTCCTCTTGTGACTGCCAATACTGTACTGTCTATTCTGGCAGTTGACTACCCTGTGGATAAGGTCTCCTGCTATGTGTCTGATGATGGTGCTGCTATGTTGACTTTTGAAGCCCTTGCCGAGACATCAGAATTCGCGAGGAAATGGGTTCCCTTTTCCAAGAAGTATAGCATTGAACCCCGTGCACCTGAGTGGTACTTTGCACAAAAGATTGACTACTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATATGAGGAATTCAAAGTTCGTATCAATGGATTAGTTGCAAAGGCACAGAAAATTCCCGAAGAAGGATGGGTGATGCAAGATGGTACACCATGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGCAATGAACTTCCCCGTTTAGTCTATGTGTCTCGTGAAAAGCGCCCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTAAGAGTATCTGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGTAAACATGTTTGTTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAATGATCGTTATGCCAATCGTAATACAGTGTTCTTTGATATAAACTTGAGAGGCTTGGATGGCATTCAGGGTCCTGTTTATGTTGGTACTGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCTCCTCTAAAACCCAAGCATAAAAAGCCTGGGTTTTTATCATCACTTTGTGGTGGAAATCGGAAGAAGAGTTCAAAGTCTAGTAAGAAAGGATCAGACAAGAAAAAATCTAGCAAGAATGTTGATCCAACTGTACCTATTTTCAGTCTAGAGGATATAGAAGAAGGAGTAGAAGGTACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCAGTTTTTGTAGCCTCCACTCTAATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGATCGGAGATAGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACCGGATTTAAGATGCATGCTCGCGGTTGGCGGTCAATATACTGCATGCCTAAGCGGCCGGCGTTTAAAGGTTCTGCTCCCATCAATCTTTCCGACCGTCTAAACCAAGTGCTTCGATGGGCTTTAGGTTCTGTGGAAATTCTTTTCAGCAGACATTGTCCCATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGGTTTGCTTATGTGAACACCACAATCTATCCAGTCACAGCCATTCCCCTTCTCATTTATTGTATCTTGCCTGCTGTCTGTCTGCTCACCAACAAGTTCATCATTCCGCAGATCAGTAACCTTGCAAGCATATGGTTCATCTCTCTCTTTCTTTCCATCTTTGCCACCGGAATCCTGGAGATGAGATGGAGCGGCGTAGGAATCGACGAGTGGTGGAGGAATGAACAGTTCTGGGTCATCGGCGGTGTCTCGGCCCATCTCTTTGCCGTTTTCCAGGGCCTTCTGAAAGTGCTGGCTGGAATTGACACCAACTTCACTGTGACCTCGAAGGCCTCAGATGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACCCTTCTGATCCCCCCCACAACCCTTCTCATAATAAACATTGTAGGAGTTGTTGCCGGCATCTCCTACGCCATCAACAGTGGCTACCAATCCTGGGGACCCCTCTTTGGGAAGCTTTTCTTTGCATTCTGGGTCATCATCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGCCGCCAGAACAGAACACCAACCATTGTGGTGGTGTGGTCGATTCTGCTTGCATCCATTTTCTCTCTGTTGTGGGTCAGAATTGATCCTTTCACCACAAGAGTCACTGGCCCTGATGTTGAAGAGTGTGGTATTAACTGCTAG 3228 0.4511 MESEGEAGAKPVTALSAQVCQICGDGVGKNVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDTEEDGAATDGASDFNYDSDTQHQKQKISERMLSWQLTYARGEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAAGGGKRVHNIPYSSDINQSPNVRAGDPGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDATTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCIFLHYRITNPVPNAYPLWLVSVICEIWFAMSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGFLSSLCGGNRKKSSKSSKKGSDKKKSSKNVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLIYCILPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEECGINC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00072 1075 CDD mRING-HC-C4C4_CesA 18 68 - -
Vian5g00072 1075 FunFam Cellulose synthase 3 94 - -
Vian5g00072 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 875 IPR029044 -
Vian5g00072 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Vian5g00072 1075 Pfam Cellulose synthase 347 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian5g00072 1075 SUPERFAMILY RING/U-box 5 88 - -
Vian5g00072 1075 FunFam Cellulose synthase 464 638 - -
Vian5g00072 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 250 1042 - -
Vian5g00072 1075 MobiDBLite consensus disorder prediction 75 103 - -
Vian5g00072 1075 MobiDBLite consensus disorder prediction 648 681 - -
Vian5g00072 1075 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Vian5g00072 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 470 638 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00072 Vian-Chr5 1315519 1321069 Dispersed/Wgd