Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02416 ATGGTTACCACCACCGTTGATTCATCCTCTAATCATCACACACCTTCTGGTGCTGCCGATACCTATAACTTCCCGCGAAAAAATCTGCCATCTCCGTGGGCCCAGGTGGTTCGCGGTGCCGATTCTGAACCTAACCATCAATCACCGCCTTCTTCTTCCTCTTCATCTTCCCTTGATTCTGTTAATTCTAGCGGTCCTGCAGCTGATGCCGTTGATGCCGCCGTGAAACCTGTGTGGAAGAGACCGTCCAATGACGTCGCGGAAATTGGGCCTGTAATGGGCGCAATATCTTGGCCCGCTTTATCCGAGTCCACCAAGCCCACTCCTAAATCGATATCTGACTCCATCGACGATGAATCACTCACCCCTCCTAAGGTTCGCATTGTGGGTCCTGTTGTTTCAGACTCTCCTCAGAAACAAGCTTCTGATAATGTGAAACCTAGTCCTGCAATAAACCATGGTTTGGGTAATAGGCAAAGGTCAATGAAGCGTGGAGGGGCAAATGGCAATAATGTTGGCTATGGTCCTGTTCAGAACAACTTCTCTGGCGCTTCCCCTCATTTTCCTCCACCACCACCACCACCCTTTCCCGTGCTTCAGATTCCTCCAAATTCATTTGCACATGGATTACCCGGGGTTCCAGTTCCTTCTCCGAGAGAACCTTACAGGAACAAAAACTGGGATACGAGGCCTCCGATTGGAGGGTTTATCGCGTCAATGAATGAGAATCGGAGTCCCTCTCGCCGGGGTAATGCTGGACATCATCCACGTGGAAATGGATCCTATCACAACAGTTATGGCAACAGGCGTGATCAGGATCGTGGAGGTTATGCAAATACCAGAGATACTCATGTAAATCATCAGAGGATGCCTCCAAGGGGATTAATGAGGCCTCCGCCGCCAAATCCTGCTTCATTTATGGGGCCTCAGCCTATGCGACCCTTTGCAAACCCTCCCGGGTTTCCTGAATTCTATTATTTCCCAACACTACAATTTGAACCTTTTGGGGGCATGCCGTTTTTAACACATGCACCTCCTCCTGCAATGTTCTTCCCGGTTGCCGAAACCCCTCTCGCCAGTACAATAGTCAACCAAATTGATTATTATTTTAGTGATGCTAATTTAGTGAGGGATGAGTATTTAAGGTCCAACATGGATGAACAAGGATGGGTTCCTATTTCTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAGTTGATACTGGAATCGTTGAGAGCTTCCACTGTCGTCGAAGTGCAGGCTGACAAGTGCAGGAGGGGTGACAAGTTGAGGAGGCGTAATGAGTGGACCAAGTGA 1332 0.4857 MVTTTVDSSSNHHTPSGAADTYNFPRKNLPSPWAQVVRGADSEPNHQSPPSSSSSSSLDSVNSSGPAADAVDAAVKPVWKRPSNDVAEIGPVMGAISWPALSESTKPTPKSISDSIDDESLTPPKVRIVGPVVSDSPQKQASDNVKPSPAINHGLGNRQRSMKRGGANGNNVGYGPVQNNFSGASPHFPPPPPPPFPVLQIPPNSFAHGLPGVPVPSPREPYRNKNWDTRPPIGGFIASMNENRSPSRRGNAGHHPRGNGSYHNSYGNRRDQDRGGYANTRDTHVNHQRMPPRGLMRPPPPNPASFMGPQPMRPFANPPGFPEFYYFPTLQFEPFGGMPFLTHAPPPAMFFPVAETPLASTIVNQIDYYFSDANLVRDEYLRSNMDEQGWVPISLIASFPRVRSLTSNIKLILESLRASTVVEVQADKCRRGDKLRRRNEWTK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02416 443 CDD LAM 362 437 - -
Vian4g02416 443 SMART la 356 438 IPR006630 -
Vian4g02416 443 Pfam La domain 362 417 IPR006630 -
Vian4g02416 443 PANTHER LUPUS LA PROTEIN-RELATED 95 443 IPR045180 -
Vian4g02416 443 MobiDBLite consensus disorder prediction 41 64 - -
Vian4g02416 443 MobiDBLite consensus disorder prediction 1 18 - -
Vian4g02416 443 SUPERFAMILY "Winged helix" DNA-binding domain 349 435 IPR036390 -
Vian4g02416 443 Gene3D - 352 443 IPR036388 -
Vian4g02416 443 ProSiteProfiles La-type HTH domain profile. 352 441 IPR006630 -
Vian4g02416 443 MobiDBLite consensus disorder prediction 241 294 - -
Vian4g02416 443 MobiDBLite consensus disorder prediction 1 169 - -
Vian4g02416 443 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02416 Vian-Chr4 40810724 40814228 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02416 4 40810724 40814228 Vian4g02416 4 40810724 40814228 ECH
Vian7g00925 7 17514762 17518176 Vian4g02416 4 40810724 40814228 PCT