Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02333 ATGGAGTCAACTCGTGCAACCTTTGGTGGCATTCTAGCTAAAGTCAGTGAGGGAACTGGAAGAAGCAGGAGAAGTGGGTTCTGGGGTGAGAGTACAAGGGGAAGTGGGAACACAAGGTTTTTAAGTGTTCAATCATGCAAAACTTCACAAACCAGTAAGAATCTTAGAAGCTCCAAGCCTCCTGGAGTTGCACGTGCTGTTCTCACATCAGACATCAACGAAGATTCGGTGGCATATCAGAGGGTGCCCACTTTTGAGACCCCCGAAGTGAACCCAAAAAGTGTGGCTTCTATAATTTTGGGTGGAGGTGCAGGAACTCGTCTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCAGCGGTTCCAATTGGTGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAACAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTTAACTCTTTTTCTCTCAACCGTCACCTGTCGCGGACATACAGCTTTGGAAATGGCATGAATTTTGGAGACGGTTTTGTGGAGGTCTTGGCCGCTACTCAGACGCCTGGAGAGGCAGGGAAGAAATGGTTCCAGGGAACAGCTGATGCTGTTAGGCAATTTATTTGGGTTTTTGAGGATGCCAAGAACAAGAATGTGGAGCATATATTGATACTTTCTGGGGATCATCTTTACCGGATGGACTATATGGACTTTGTACAGAGACACGTTGACACGAATGCTGATATCACAGTTTCATGTGTTCCCATGGATGACAGCCGGGCATCAGACTATGGACTGATGAAAATTGATAAAACCGGACGAATTGTACAGTTTGCAGAAAAACCTAAGGGATCGGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTACGTGTTTAGAACTGAAACTCTGCTCCAACTATTAAGATGGAAATGTTCTTCATTCAATGACTTTGGATCTGAAATTATCCCATCTGCAGTGAGCGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAACCTCGCCCTAACAGAACAGCCTCCTAAATTTGAGTTTTATGATCCAAAGACACCTTTCTTCACTTCCCCAAGATTCCTCCCACCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGTTGCTTCTTGAGGGACTGTAGCGTTCAGCACTCTATTGTGGGAGTACGCTCACGTTTAGAATCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAGACCGAGTCAGAAATTGCATCTTTGCTGGCAGAAGGAAAGGTTCCAATTGGTGTTGGGGAAAATACAAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAAGAATGTTATCATCGCAAATGCAGATGGTGTCCAAGAAGCTGATAGGGCCAAGGAAGGATTCTACATCAGATCTGGCATCACGATTACACTGAAAAATGCAACCATTAAAGATGGAACAGTTATATGA 1587 0.4373 MESTRATFGGILAKVSEGTGRSRRSGFWGESTRGSGNTRFLSVQSCKTSQTSKNLRSSKPPGVARAVLTSDINEDSVAYQRVPTFETPEVNPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYSFGNGMNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIVQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWKCSSFNDFGSEIIPSAVSEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRDCSVQHSIVGVRSRLESGVELQDTMMMGADYYQTESEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGKNVIIANADGVQEADRAKEGFYIRSGITITLKNATIKDGTVI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02333 528 NCBIfam glucose-1-phosphate adenylyltransferase 96 492 IPR011831 GO:0005978|GO:0008878
Vian4g02333 528 Gene3D Hexapeptide repeat proteins 394 528 - -
Vian4g02333 528 FunFam Glucose-1-phosphate adenylyltransferase 394 528 - -
Vian4g02333 528 Pfam Nucleotidyl transferase 97 374 IPR005835 GO:0009058
Vian4g02333 528 CDD ADP_Glucose_PP 98 359 - -
Vian4g02333 528 SUPERFAMILY Nucleotide-diphospho-sugar transferases 95 489 IPR029044 -
Vian4g02333 528 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 393 IPR029044 -
Vian4g02333 528 SUPERFAMILY Trimeric LpxA-like enzymes 390 528 IPR011004 -
Vian4g02333 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 101 120 IPR005836 GO:0005978|GO:0008878
Vian4g02333 528 CDD LbH_G1P_AT_C 396 522 - -
Vian4g02333 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Vian4g02333 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Vian4g02333 528 FunFam Glucose-1-phosphate adenylyltransferase 76 393 - -
Vian4g02333 528 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 46 528 IPR011831 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02333 Vian-Chr4 40068486 40071930 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02333 4 40068486 40071930 Vian4g02333 4 40068486 40071930 ECH
Vian7g00839 7 16648680 16652192 Vian4g02333 4 40068486 40071930 PCT