Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02317 ATGGCCTCAAGCCAGGGTTGGACACCGAAGCAGAACAAAAGATTTGAGAATGCCCTTGCCATCTTCGACGAGGACACCCCAGATAGGTGGCACAACCTGGCCAGAGCCGTCGGAGGAAAAACTGTCGAAGACGTCAAAAGACATTATCAGAAGCTCGTCGAAGATGTCAAGCAGATCGAGGAAGGCCACGTGCCCCTTCCCAATTACCGAACTGTTTCAACCATGGCAAGCAGCATCAGAGGTTACGGTTACATCAATGAAGAAAACAGGTTATTATTATTTGCTAACTCGTTCTTCTTCTTAAATAACCTTAAAAGATAA 321 0.4611 MASSQGWTPKQNKRFENALAIFDEDTPDRWHNLARAVGGKTVEDVKRHYQKLVEDVKQIEEGHVPLPNYRTVSTMASSIRGYGYINEENRLLLFANSFFFLNNLKR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02317 106 FunFam Transcription factor SRM1 1 66 - -
Vian4g02317 106 SMART sant 3 55 IPR001005 -
Vian4g02317 106 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Vian4g02317 106 Gene3D - 1 66 - -
Vian4g02317 106 CDD SANT 7 53 IPR001005 -
Vian4g02317 106 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 76 IPR044636 GO:0003700
Vian4g02317 106 Coils Coil 42 62 - -
Vian4g02317 106 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02317 Vian-Chr4 39991761 39992081 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian4g02317 Myb_DNA-binding 7.4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02317 4 39991761 39992081 Vian4g02317 4 39991761 39992081 ECH
Vian7g00820 7 16510396 16511204 Vian4g02317 4 39991761 39992081 PCT