Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02300 ATGACTTCCGACGGAGCAACGTCGGCTGCGGTGGCCAATAGGAGGAAACCATCCTGGAGGGAAAGAGAGAACAACAGGAGGAGAGAGAGGCGAAGAAGAGCCATAGCAGCCAAGATATACACTGGCCTCCGCGCTCAGGGAAACTACAATTTGCCCAAACATTGCGACAACAACGAGGTTTTGAAGGCTCTCTGTGCCGAAGCTGGTTGGACTGTTGAAGAAGATGGTACAACCTATCGCAAGGGATGCAGGGCACCACTTGCAGATGGTGTTGGCACCTCAACCAGAAACACCCCTTTTTCATCGCAAAATCCGAGTCCCCTCTCGTCGTCATTTCCGAGTCCAATTCCTTCCTACCAAGTGAGCCCCTCCTCCTCCTCTTTCCCGAGCCCCTCTCGTTTGGATGACAACAATGCGTCAAATTTGATTCCCTATATTCGACATTCGTTCTCTGCTTCTCTCCCTCCTCTGAGGATATCAAATAGCGCCCCTGTGACCCCGCCTTTGTCCTCGCCAACTTCAAGAAACCCCAAACCAATCCCAACATGGGACTCCATTGTCAAAGCCTCCATGGCATCATCCTTCAACCACCATCACCACCACCATCAAAACCACCCTTTCTTTGCGGCTTCTGCCCCGGCTAGCCCCACACACCGCCACCTTCATGCCCCGCCCACTATTCCCGAATGTGACGAGTCTGATACCTCCACTGTTGAGTCTGGCCAGTGGTTGAACTTCCAAGCATTTGGACCTTCTGTTTCTGCGGTGCCCATCTCTCCCACCTTGAACTTTATCAAACCTGTTCCGAGTCAGCAGCACAAGCACAACCTTAACCACCCTGATAACCGTATCCAGGAGATGAGAAACTCAGAAGTCCAATTTGGAGTGCAGGTGAAGCCCTGGGTTGGGGAGAGGATTCACGAAGGTGGATTGGATGATTTGGAGCTCACACTTGGAAGCGGGAAGACGCTTGCTTAG 978 0.5235 MTSDGATSAAVANRRKPSWRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGCRAPLADGVGTSTRNTPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRLDDNNASNLIPYIRHSFSASLPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIVKASMASSFNHHHHHHQNHPFFAASAPASPTHRHLHAPPTIPECDESDTSTVESGQWLNFQAFGPSVSAVPISPTLNFIKPVPSQQHKHNLNHPDNRIQEMRNSEVQFGVQVKPWVGERIHEGGLDDLELTLGSGKTLA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02300 325 MobiDBLite consensus disorder prediction 1 31 - -
Vian4g02300 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 141 IPR008540 -
Vian4g02300 325 MobiDBLite consensus disorder prediction 91 135 - -
Vian4g02300 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 5 323 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vian4g02300 325 MobiDBLite consensus disorder prediction 89 135 - -
Vian4g02300 325 MobiDBLite consensus disorder prediction 15 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02300 Vian-Chr4 39854073 39855784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vian4g02300 BES1_N 4.2e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02300 4 39854073 39855784 Vian4g02300 4 39854073 39855784 ECH
Vian7g00796 7 16260128 16275666 Vian4g02300 4 39854073 39855784 PCT