Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02297 ATGGCTCGGTGCACCTCATGCGCGCTTTCCAGATTTCATTGCAAGCTTAGATTTGCTGTGGTTGTTTTCGTGATTATATTGATATTGGCGTGGGTGGAGGCCCGCAATGCAAATCTCCACGAACACCAACTTCAGGGAGACTGGGAGAGGAATACTGAGAACATTGCCACCCATTCTTGCATACACGATCAGATTCTTGAACAGAGGAAGCGGCCTGGGCGAAAGGTGTATTTAGTTACCCCACAGGTTTATGAGCCCAGTCGCTTAAAACATCTTCAGCACAAAGGTAGGGCATTACTTGATGTGTCAACTTCTTCAGGTTCTCAAGAGGATGCAAAGAAGCCTATTAGGATATATCTAAATTATGATGCTGTTGGCCACTCCCCTGACAGGGATTGTCGAGCAGTTGGCGATATTGTTAAACTCGGGGAGCCTCCCATGACTTATCCTCCCGGTTTTCCTTCTTGTGATCCCCATGGCAATCCTCCAATATTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACGTCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCGGTTGAACCTGTCAAGGGGAACTTGCGTTTGAGTGGGTATTCTGCATGTGGACAAGATGGAGGCGTGCAGCTTCCTCGTGGATATATTGAGGAGGGTGTCTCTGATGCTGACTTGGTTCTTTTGGTGACTACAAGACCTACAACTGGAAATACACTTGCCTGGGCAGTGGCATGTGAGCGAGATCAATGGGGTCGTGCGATAGCTGGACATGTTAATGTTGCGCCTCGCCATTTGACTGCCGAGGCAGAGACTTTACTTTCCGCTACTCTTATACACGAGGTTATGCATGTTCTTGGTTTTGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGGCGTAATCAGGTTACCAAACAAGTTATGGATGAAAAGCTTGGACGAGTGGTAACACGTGTGGTGCTTCCTCGCGTTGTCATGCATTCTCGATATCATTATGCGGCGTTCTCAGGGAATTTTTCTGGTTTGGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGATCTCACTGGGAAAAACGGCTTCTGATGAATGAAATTATGACTGGTTCTGTGGATACAAGATCTGTTGTTTCAAAAATGACATTAGCTCTATTAGAAGATAGTGGATGGTACAAAGCCAACTATAGTATGGCAGACCGTCTTGATTGGGGTCTCAACCAAGGTACCGAGTTTGTTACATCCCCTTGCAATCTTTGGAAGGGAGCCTATCGTTGCAACACAACACAGTTTTCCGGCTGTACATATAACAGGGAGGCAGAGGGATACTGCCCTATCCTAACTTATAGTGGAGATCTCCCCCAGTGGGCTCGGTATTTTCCGCAACCTAATAAGGGCGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCTTACTCTGATGGATCATGTACAGACACTAATAGTGCTCGAGCACCTGATAGAATGCTAGGTGAAGTCAGAGGAAGTAACTCTAGGTGTATGGCTTCATCACTAGTACGGACTGGCTTTGTACGAGGTTCTATGACCCAGGGAAATGGTTGTTATCAGCACAGATGTATTAATAATTCTTTGGAGGTTGCAGTGGATGGCATCTGGAAAGTGTGTCCTCAAACTGGTGGACCCATTCAGTTCCCAGGCTTTAATGGTGAATTAATCTGCCCTGCCTACCATGAGCTCTGTAACACTGACCCAATAGCTGTGTCTGGTCAATGCCCTAATTCATGTAATTTCAATGGAGATTGTGTTGATGGAAAGTGCCGATGCTTTCTTGGATTTCACGGGAATGATTGCAGTAGACGTTCTTGCCCTAGCAAATGCAATGGCAATGGAATGTGCCTTTCCGATGGGATTTGTGAATGTAAACCTGGCTATACTGGCATTGATTGCTCCACTGCTGTGTGTGACGAGCAATGCAGCCTTCACGGCGGGGTTTGTGATAATGGAGTTTGTGAATTCCGCTGTTCAGACTATGCGGGTTATACATGCCAGAACAGCTCCATGCTCCTCTCTGGTCTTTCTGTGTGCAAAAATGTGCTGGGAAATGATGTTTCTGGGCAGCATTGTGCCCCCAGTGAGCCTAGCATTCTTCAACAGCTGGAAGAAGTAGTTGTCTTACCCAACTACCATCGATTATTCCCTGGAGGTGCTAGGAAACTATTTAATATATTTGGCAGCACCTACTGTGATGAGACTGCTAAACGTCTTGCCTGCTGGATCTCGATCCAGAAGTGTGAGAAGGATGGAGATAATAGGCTTCGGGTATGCCATTCTGCATGCGAATCTTATAATCTGGCTTGTGGAGCTTCACTTGACTGCTCTGATCAGACCCTTTTCAGCCGTGACGGGGAAGGGGAGGGTCAATGCACTGGCTCTGGTGAGATGAAAATGTCATGGTTTAATCGTCTACGAAGCACATTTTCTTTGAGAAATAGTTCCTTGAAAGGAATATCTGTAAGATATAGGCAGCTTTAA 2571 0.4609 MARCTSCALSRFHCKLRFAVVVFVIILILAWVEARNANLHEHQLQGDWERNTENIATHSCIHDQILEQRKRPGRKVYLVTPQVYEPSRLKHLQHKGRALLDVSTSSGSQEDAKKPIRIYLNYDAVGHSPDRDCRAVGDIVKLGEPPMTYPPGFPSCDPHGNPPIFGDCWYNCTSEDISGEDKKRRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRGYIEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNQVTKQVMDEKLGRVVTRVVLPRVVMHSRYHYAAFSGNFSGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADRLDWGLNQGTEFVTSPCNLWKGAYRCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGIWKVCPQTGGPIQFPGFNGELICPAYHELCNTDPIAVSGQCPNSCNFNGDCVDGKCRCFLGFHGNDCSRRSCPSKCNGNGMCLSDGICECKPGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSMLLSGLSVCKNVLGNDVSGQHCAPSEPSILQQLEEVVVLPNYHRLFPGGARKLFNIFGSTYCDETAKRLACWISIQKCEKDGDNRLRVCHSACESYNLACGASLDCSDQTLFSRDGEGEGQCTGSGEMKMSWFNRLRSTFSLRNSSLKGISVRYRQL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02297 856 Gene3D - 592 632 - -
Vian4g02297 856 ProSitePatterns EGF-like domain signature 2. 651 662 IPR000742 -
Vian4g02297 856 FunFam leishmanolysin-like peptidase isoform X2 437 496 - -
Vian4g02297 856 FunFam Peptidase M8, leishmanolysin 109 299 - -
Vian4g02297 856 Coils Coil 853 856 - -
Vian4g02297 856 Pfam Leishmanolysin 170 595 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vian4g02297 856 Pfam EGF-like domain 635 662 IPR013111 -
Vian4g02297 856 FunFam SD03917p 592 634 - -
Vian4g02297 856 FunFam leishmanolysin-like isoform X2 498 593 - -
Vian4g02297 856 SMART egf_5 634 663 IPR000742 -
Vian4g02297 856 SMART egf_5 603 631 IPR000742 -
Vian4g02297 856 Gene3D Laminin 633 700 - -
Vian4g02297 856 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 111 599 - -
Vian4g02297 856 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 53 815 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vian4g02297 856 FunFam Teneurin transmembrane protein 2 634 665 - -
Vian4g02297 856 Gene3D Leishmanolysin domain 4 498 591 - -
Vian4g02297 856 ProSiteProfiles EGF-like domain profile. 631 663 IPR000742 -
Vian4g02297 856 Gene3D - 108 299 - -
Vian4g02297 856 Gene3D Leishmanolysin domain 3 437 496 - -
Vian4g02297 856 FunFam leishmanolysin-like peptidase isoform X2 310 434 - -
Vian4g02297 856 Gene3D Leishmanolysin , domain 2 309 434 - -
Vian4g02297 856 ProSitePatterns EGF-like domain signature 1. 651 662 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02297 Vian-Chr4 39795334 39803158 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02297 4 39795334 39803158 Vian4g02297 4 39795334 39803158 ECH
Vian7g00793 7 16210051 16217567 Vian4g02297 4 39795334 39803158 PCT