Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02292 ATGGCGAAATCGAGCGCCGACGATGCCGAGCTTCGGCGAGCGTGCCAGCTCGCAGTTGAGGGTACCAAGCACAAGGTCGTTCTCTGCATTCGGACCGTCAAGACTCACGGCACGTGGGCAAAATCTGCTAAGGTTCGCCAAATGGCCAAGCCTAGGGTTCTCGTTCTATGCACAAAAGCGAAAGGTCAGCGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCAACAGGAGGGGTGCTTGAGCCTGCTAAGTTATACAAGCTGAAGCACCTCTCAAAAATGGAAGTTGTAACAAATGACCCCAGTGGATGTACATTTACACTGGGGTTTGATAACCTTAGAAGCCAGAGCGTTGCTCCTGCACAGTGGACAATGCGCAATACGGATGACAGAAATCGCCTCCTCCTTTGTATCTTAAATATCTGCAAAGATGTCCTGGGTCGCTTACCGAAGGTTGTTGGTATTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTTCCGCTCAAAGTAACCAACACGATGGTGCTTCTATTGCATCTTCTGTGACTGAATCAGAATTGAAAGTCTATGTTGAAAAGGAACTTGTCTCCCAGGCCGAGGAAGAGGACATAGAGGCTCTTCTGGGAACTTATATCATGGGTGTTGGTGAAGCAGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATAGATGAGGTATTGCACGGGCTTGAGTCAGCAACAAATAGTCTGGAAGACATGAATGAATGGTTAGCCATGTTCAACGTAAAACTTCGACACATGAGGGAAGATATTGAATCAATTGAAACCCGCAATAACAAGTTGGAAATGCAAAATGTAAATAACAGATCTCTTATTGAAGAGCTTGATAAGCTTCTTGAGCAATTGAGTATCCCTTCAGAGTATTCAGCATGTTTGACAGGAGATTCATTTGATGAAGCACAAATGCAGCAAAACATAGAAGCATGTGAGTGGTTGACAACTGCCATGCGTGGTCTAGAAGTGCCTAACATAGATCCTACTTATGCAAAAATGAGAGGAGTTAAAGAGAAGCGAGGAGAACTTCAAATAATAAAGTCTACTTTTGTTGGGAAAGCTTCTGAGTACATGAGAAATTACTTTGCTACTTTTGTGGACTTTATGTTGAATGATAAAAATTACTTCTCTCAGCGAGGGCAGTTGAAAAGGCCAGATCATGCTGACTTGAGGTTCAAGTGTAGGACATATGCGCGCCTTCTTAAGCATTTAAAGTTTCCTGTAAACCTGCAGATTCTTGATAAGAATTGTTTGGGTCCACTGAGAAAAGCCTATTGCAGTTCTCTAAACTTGCTTCTTCGAAAGGAGGCCCGGGAATTTGCTAATGAACTTCGTGCTGGTGTGAAAACTTCTAAAACCCCCTCTGTTTGGCTTGAAGTCTTCACGGGATCCGGTCAAAATGTAAATCCTGCTGACACTGCAACAGTTTCTGAAGCATATGCAAAGATGCTCACGATTTTTATCCCACTCTTGGTGGATGAGGTGAAAGTTCTTAGGATTCTCCCTTCCACCGAACTTGTTAATATTTCATTTCCTTCAGCTGTTGATGGTAATAAAACTACACACAATGATGAGGATGATGATGGTATTGCATCTGGTAAAATTGCTGTGGATCTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGACTTCGGTTCTGTTGTGGACTGGGCATACAAGATTGATCCTTTGTGCTGCATATCAATGCATGGAACTACAGAGCGCTATCTCTCGGGTCAGAAAGCTGATGCAGCAGGATATGTACGCGTTTTGCTTGATGACTTAGAGGCTCGCATATCCTTTCAGTTCGGTCGATTTGTGGACGATGCTTGCCATCAAATTGAAAGAAATGAGCGCAATGCTCGCCAAACAGGTGTCCTACCATACATTCCTAGCCACGAAGTGAAAAACAGTCAAACAATGTGGAAAATAGTCAAACAGAGGGCAACCAGCCAAACAGTGTCAGAATGGAAGAAGGACCAAAAGTCCAAAACCAACCCGACAGGGCGAGTCTGGTTGCAAAGACATTTGCTGGAAAGCTCATTAGAAGTCATCGACAATGAAGAGTATTATCGGAGATTTGCAGCCCTTGCAACTCGGATGGAACAGTTTGTTGCAGGACAGTCGAGGGATTTGGTTGACCAAGCCTACACAAAATTTGTCAGCATAATGTTTGTAACTTTAGAAAAAAATGCACAAGCAGATCCGAAGTATGCAGATATTTTTCTCATAGAAAACTATGCCGCATTTCAGAATAGTTTGTATGACCTTGCAAATGTTGTGCCCACTTTAGCGAAGTTTTATCATCAAGCTAGTGAAGCCTACGAGCAAGCTTGTACACGCCATATTAGTGTGATTATCTACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAAGATCGAGGACTTGATATTGAATAATGTTGCACCTGAAGAGATTCCTTTCCAAGTTGGGCTGTCAAAAGCGGATCTACGGAAGACGTTAAAGTCCAGTTTATCCGGGGTGGACAAGTCCATTGCTGCCATGTATAAGAAATTGCAGAAAAACTTGACTTCCGAGGAACTCTTACCTTCCTTATGGGATAAATGCAAGAAGGATTTTCTTGATAAGTACGAAACTTTTGTCCAACTTGTTGCCAAGATATACCCAGCTGAGTCAGTCCCTTCTGTGGGGGAGTTGCGAGACCTTCTAGCTTCCATGTAA 2826 0.4299 MAKSSADDAELRRACQLAVEGTKHKVVLCIRTVKTHGTWAKSAKVRQMAKPRVLVLCTKAKGQRTKAFLRVLKYSTGGVLEPAKLYKLKHLSKMEVVTNDPSGCTFTLGFDNLRSQSVAPAQWTMRNTDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPAVSAQSNQHDGASIASSVTESELKVYVEKELVSQAEEEDIEALLGTYIMGVGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLHGLESATNSLEDMNEWLAMFNVKLRHMREDIESIETRNNKLEMQNVNNRSLIEELDKLLEQLSIPSEYSACLTGDSFDEAQMQQNIEACEWLTTAMRGLEVPNIDPTYAKMRGVKEKRGELQIIKSTFVGKASEYMRNYFATFVDFMLNDKNYFSQRGQLKRPDHADLRFKCRTYARLLKHLKFPVNLQILDKNCLGPLRKAYCSSLNLLLRKEAREFANELRAGVKTSKTPSVWLEVFTGSGQNVNPADTATVSEAYAKMLTIFIPLLVDEVKVLRILPSTELVNISFPSAVDGNKTTHNDEDDDGIASGKIAVDLAALNESLQDLLDGIQEDFGSVVDWAYKIDPLCCISMHGTTERYLSGQKADAAGYVRVLLDDLEARISFQFGRFVDDACHQIERNERNARQTGVLPYIPSHEVKNSQTMWKIVKQRATSQTVSEWKKDQKSKTNPTGRVWLQRHLLESSLEVIDNEEYYRRFAALATRMEQFVAGQSRDLVDQAYTKFVSIMFVTLEKNAQADPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISVIIYYQFERLFQFARKIEDLILNNVAPEEIPFQVGLSKADLRKTLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYETFVQLVAKIYPAESVPSVGELRDLLASM 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02292 941 Coils Coil 280 317 - -
Vian4g02292 941 Coils Coil 220 247 - -
Vian4g02292 941 Pfam Exocyst complex component Sec3 574 924 IPR019160 GO:0000145|GO:0006887
Vian4g02292 941 Pfam Exocyst complex component Sec3 223 490 IPR019160 GO:0000145|GO:0006887
Vian4g02292 941 PANTHER SEC3/SYNTAXIN-RELATED 57 672 - -
Vian4g02292 941 SMART Sec3_PIP2_bind_2 47 145 IPR028258 -
Vian4g02292 941 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 48 143 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02292 Vian-Chr4 39749627 39764516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02292 1 941 EF-hand Containing Proteins AT1G47550 68.443 0.0 1323
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02292 4 39749627 39764516 Vian4g02292 4 39749627 39764516 ECH
Vian7g00782 7 16094991 16109944 Vian4g02292 4 39749627 39764516 PCT