Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02276 ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGACAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGGTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCAGCTTCTGACCACTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACAGCCTGGCTTCGCTTTTCGCAGAAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCAGTGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTCAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCCCAGGGAGCCTCCTCAATCCAGAGGGAAGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTCGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCACAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCAGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCTTCATTCACAAGGCCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCTGCTAACAGTTCAAGAAGTAATAATCGGGGAGTGCCAGCTTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAACTCTCCCTGCTCAATGACAGAAGTAAACAGTCCTAAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCTCTCACCACCGTTATGAGAATCATCAGGCACATTTGA 2031 0.4613 MSNANCNKPSSPQPTIKQRRLTRQGRLRYLSDKDAGLHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEQPGFAFRRRSVDHDAVRSIRSTSNLGRPSFDPVASNAKHDLRVNIPPARVLAGNTSSCKDHIERSQDNDSENVSDFRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPVKTAQSPDRTPLRSPGSLLNPEGSQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRNSPCSMTEVNSPKSSALNYMANSSNIPLTTVMRIIRHI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02276 676 MobiDBLite consensus disorder prediction 1 20 - -
Vian4g02276 676 Gene3D Transferase(Phosphotransferase) domain 1 295 581 - -
Vian4g02276 676 SMART serkin_6 298 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02276 676 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 585 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 622 647 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 214 280 - -
Vian4g02276 676 Pfam Protein kinase domain 299 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02276 676 ProSiteProfiles Protein kinase domain profile. 298 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02276 676 MobiDBLite consensus disorder prediction 571 604 - -
Vian4g02276 676 SUPERFAMILY Protein kinase-like (PK-like) 272 568 IPR011009 -
Vian4g02276 676 MobiDBLite consensus disorder prediction 214 248 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 35 64 - -
Vian4g02276 676 ProSitePatterns Protein kinases ATP-binding region signature. 304 327 IPR017441 GO:0005524
Vian4g02276 676 FunFam Mitogen-activated protein kinase kinase kinase 5 295 598 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 587 603 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 1 95 - -
Vian4g02276 676 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02276 Vian-Chr4 39598958 39603631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02276 20 561 MAP Kinase Kinase Kinase AT5G66850 45.059 6.07e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian4g02276 Pkinase 3.1e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02276 4 39598958 39603631 Vian4g02276 4 39598958 39603631 ECH
Vian7g00768 7 15934699 15939756 Vian4g02276 4 39598958 39603631 PCT