Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02259 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACTGAGAAGCCGGATGTTGTCCTCGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACGCTGCTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACGTATTCTGTTTTTGGGCTATTTGATGGACATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTTTCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATTATAGATGGATGTGTTGTGACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATTTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGATCCATTGGTGATAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACTGCTGGAGGCAGGATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGAAATGGCCTTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCCGCACCACATATTGTGAAAGAAGCCGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGATGTATATCCGCAGGAGAAGCCACCTACTTCAGGGACAACACAAAAGAAACCGGTAAAAGGAAGGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTACATTGACAAACAATACCTCGAGCCAGATGTGGTACGGGAACTATACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTGGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTGTCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGGGAGGGTATTTCCATACACGTGGGTGCGTCTAATCCAGGAAGGTTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAGGAGAAGAGAGAAGCCATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGAAGTGACTAA 1290 0.4667 MSGLGERQTVPLSVLLKRELANEKTEKPDVVLVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGIYYLSADHRLDSNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTAGGRIIISSDGVWDALTAEMAFDCCRGMSAEVAAPHIVKEAVQAKGLRDDTTCIVIDVYPQEKPPTSGTTQKKPVKGRLKSIFRKKSSESSSYIDKQYLEPDVVRELYEEGSAMLSERLETKYPLCNMFKLFVCAVCQVEIKPGEGISIHVGASNPGRLRPWDGPFLCSSCQEKREAMEGKRTSDRLSSGSD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02259 429 SMART PP2C_SIG_2 48 295 IPR001932 -
Vian4g02259 429 CDD PP2Cc 40 295 IPR001932 -
Vian4g02259 429 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Vian4g02259 429 Pfam Protein phosphatase 2C 59 279 IPR001932 -
Vian4g02259 429 SMART PP2C_4 19 293 IPR001932 -
Vian4g02259 429 Gene3D - 22 303 IPR036457 -
Vian4g02259 429 FunFam probable protein phosphatase 2C 12 34 301 - -
Vian4g02259 429 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Vian4g02259 429 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02259 Vian-Chr4 39464369 39468349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02259 1 429 PP2C-type Phosphatase Gene Family AT1G47380 76.744 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02259 4 39464369 39468349 Vian4g02259 4 39464369 39468349 ECH
Vian7g00738 7 15625581 15629454 Vian4g02259 4 39464369 39468349 PCT