Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02255 ATGCAAAGTTTGAGTGTTCGAAAGATGCTGAAGACAAGGCCATCTAAAGCTTTGATCACCATAATCAATTTTGTTTTCCTCATTGTCTTTCTGCTTGTTTATGCCACCATTCTTCCCCACCCATCTTCTGACTATTTGGAGAATGCGGGCTCCCTTGTGAGGTGCTCCTTGGGCGAATGTCATCACAAGGCAGAAAAAAGCTTGAAAATGAAAGCGGTACTGGAAGAACCTCAAGAAAACCAACATAGGGAAAAGAATGTAGTACCAAGCTTTTTTGGCGAGATGGGGAAAGGAACGAGGATAGGAATGGTGAACATGGAAGAAGGCCTTGTGAGAGAATGGAGCACGCATGGGGAAACCACGACGGTTCATTTCCAGAGGGTATCACAGTCTCTGAACTGGACAGACTTGTTTCCCGAATGGATAGACGAGGAAGAAGAGAATGATGTGCCGTCGTGTCCGGAGATACCTATGCCAGAGTTTGCAGAATATGGATGCATGGACATCATCGTTGCCAAGCTGCCATGCAGGTATCCCCAAAAAGGATGGAACAGGGACGTTTTTAGGTTGCAAGTTCATCTTATAGTTGCGAATTTAGCCACAAAGAATGGGAAGAAGGATTGGAGAGGGAAGACTAGAGTGGTTTTTTGGAGCAAGTGTAGACCAATGATGGAACTGTTTCCATGCGACAACTTGGTTAAGCGGGAAGGTGAATGGTGGTACTATGAAGCTGACATGAATAAGTTACAGCACAAAGTTTCATTGCCCGTCGGTTCGTGCAAGTTGGCCATGCCTCTCTGGGAACAAGGAAGGAAGGAGTTGTTGAAGAGTGAGAAAAACGGTGAAAGCAGAGGGAAAATGAAGCGCGAAGCCTATGCGACAGTGTTGCATTCCTCAGAAGCATACGTTTGCGGCGCAATAACACTAGCACAAACCCTCCACCAAACAGGGACCAAACGCCACCTAATCCTCCTCGCCGATAAGTCAATCTCCGTTCCCAAACGCAGGTCTCTATCGGAAGCGGGTTGGAAGATCCGAATGATTACCCGGATCCGAAACCCAAGGGCAGAGAAGGGAAGCTACAATGAATACAACTACAGCAAGCTCCGACTGTGGCAGCTCACCGACTACGACAAAATAATATTCATCGATTCCGACATCATCGTTCTCCGGAACCTGGACATCCTCTTCCGCTTCCCGCAGATATCCGCCACGGGGAACGACCAATCGATATTCAACTCCGGGATAATGGTGATCGAACCTTCGAACTGCACGTTCGGCGAGCTGATGGGGCTTCGCGATGTCATCGTTTCGTACAACGGAGGGGACCAGGGGTTTCTGAACGAGGTGTTGGTGTGGTGGCACAGGCTGCCGCGGAGGGTGAACCTTCTAAAGAATTTCTGGGCGAACACGAGTGCAGAGGCAAGGGAGAAGAATGCGCTGTTCGGGGCGGAGCCGGCAGAGGTGTATGCGATTCACTACCTGGGGTGGAAGCCCTGGCACTGCTTCAGGGACTACGACTGCAATTGGGACACCCTGGAGCAGAGGGTGTACGCCAGCGACGTGGCGCACCGGAGATGGTGGAAGGTTCACGACGCCATGGAGGACGGTTTGCAAAGATTATGTGGGTTGACGAAACGGCGTCGCACTGAGCTGAAGTGGGAGAGGAGGAAGGCTCGGAGCATGGGCTTTTCTGATGGACATTGGAAAATCAATATCACTGATCCCAGACGATTTACCCCTCTTCTCATCCATTAG 1758 0.5006 MQSLSVRKMLKTRPSKALITIINFVFLIVFLLVYATILPHPSSDYLENAGSLVRCSLGECHHKAEKSLKMKAVLEEPQENQHREKNVVPSFFGEMGKGTRIGMVNMEEGLVREWSTHGETTTVHFQRVSQSLNWTDLFPEWIDEEEENDVPSCPEIPMPEFAEYGCMDIIVAKLPCRYPQKGWNRDVFRLQVHLIVANLATKNGKKDWRGKTRVVFWSKCRPMMELFPCDNLVKREGEWWYYEADMNKLQHKVSLPVGSCKLAMPLWEQGRKELLKSEKNGESRGKMKREAYATVLHSSEAYVCGAITLAQTLHQTGTKRHLILLADKSISVPKRRSLSEAGWKIRMITRIRNPRAEKGSYNEYNYSKLRLWQLTDYDKIIFIDSDIIVLRNLDILFRFPQISATGNDQSIFNSGIMVIEPSNCTFGELMGLRDVIVSYNGGDQGFLNEVLVWWHRLPRRVNLLKNFWANTSAEAREKNALFGAEPAEVYAIHYLGWKPWHCFRDYDCNWDTLEQRVYASDVAHRRWWKVHDAMEDGLQRLCGLTKRRRTELKWERRKARSMGFSDGHWKINITDPRRFTPLLIH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02255 585 PANTHER GLYCOGENIN SUBFAMILY MEMBER 184 578 - -
Vian4g02255 585 FunFam Hexosyltransferase 287 538 - -
Vian4g02255 585 SUPERFAMILY Nucleotide-diphospho-sugar transferases 287 539 IPR029044 -
Vian4g02255 585 CDD GT8_Glycogenin 290 534 - -
Vian4g02255 585 Pfam Glycosyl transferase family 8 295 501 IPR002495 GO:0016757
Vian4g02255 585 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 286 536 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02255 Vian-Chr4 39427637 39431337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02255 70 584 Glycosyltransferase AT4G33330 63.757 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02255 4 39427637 39431337 Vian4g02255 4 39427637 39431337 ECH
Vian7g00730 7 15533551 15537336 Vian4g02255 4 39427637 39431337 PCT