Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02244 ATGGCTCTTCTTCTTGACAACTGTGAAGGCATTCTACTCTCCTTGGACTCACACAAATCAGTGCCAGCTCCTTTTCTCACCAAAACATACCAACTCGTCGACGACCCCGCCACAGATCACATAGTTTCTTGGGGTGAAGACGACACCACTTTCGTCGTTTGGCGTCCTCCTGAGTTCGCCAGAGACCTTCTTCCCAACTACTTCAAACACAACAACTTCTCCAGTTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTACCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGAGAGAAACACCTGTTGTGCGAGATCCATAGGAGAAAAACCGCTCAGCCTCAACAAGGGAGCATGAATCACCATCACCACCATTCACATTCTCCACTCGGAGTCAACGTTAGCGTTCCCACTTTCTTTCCCTTTTCCAGCAGAGTCAGCATCTCTCCCTCCAACGACTCCGACGACCAAACCAATTGGTGTGACTCTCCGCCACGTGGAGCCACCTCATTGATGAACGGTGCAGCTAACTACAGCACTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTCAGGCTAAGCAACAACATGCTCATGTCGGAACTTGCGCACATGAAGAAGCTTTACAATGACATTATCTATTTCGTTCAGAACCATGTCAAGCCCGTTGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTGTGTAATACACCCACGGGTACTCCGATGAATGGGGGCAATGTTTCGATGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTAATAACCCTAAGCAAGGAACTACTCCAATAACTCAACATCAGCAACATCAGCAACATCAACCTCAGACCTATGTTGTGAACTCCCCCACCAACACATCAAGGAGTTCTATAACGATTGTTGAAGGGCCTAGCGGTAACGTTAACAGCTGCAAGACAAAGCTTTTTGGCGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCCGATTTTGGATCTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGGTTGAATCTCATGCCTCCGTCCACTTGTTAG 1104 0.4819 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSNDSDDQTNWCDSPPRGATSLMNGAANYSTSVTALSEDNERLRLSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPTGTPMNGGNVSMMQRPMNQLLGYYSNNPKQGTTPITQHQQHQQHQPQTYVVNSPTNTSRSSITIVEGPSGNVNSCKTKLFGVSLQSKKRVHPDFGSNSETNKARLVLEKDDLGLNLMPPSTC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02244 367 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02244 367 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02244 367 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02244 367 FunFam Heat stress transcription factor B-4 17 115 - -
Vian4g02244 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 290 IPR027725 -
Vian4g02244 367 Gene3D - 17 116 IPR036388 -
Vian4g02244 367 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vian4g02244 367 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02244 367 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02244 367 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02244 Vian-Chr4 39311959 39313164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02244 1 366 HSF AT1G46264 55.039 7.39e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian4g02244 HSF_DNA-bind 2.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02244 4 39311959 39313164 Vian4g02244 4 39311959 39313164 ECH
Vian7g00717 7 15409008 15410655 Vian4g02244 4 39311959 39313164 PCT