Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02243 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTAATATGAACTCACCTTATGTGAATTCCATTGATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGCAATACCCCAAATGAGATTAACAATAATGAGCCAAAACGAGAAGTTGGATGGACATCAACCATTACTGCTGGTGCGTTGCCTGGTGCAAGGCTAGAAGAAAGGCGCCTTGAACCAACCAATACACTTTCTCTAGACAATGATAACACAAGTGCTGTGTACATGCGCAGTCCCGAGTCTCGTTTAATGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGATAGTGGCGATGATAATAGTCAACATCTGGAGCTCCCTAACTTACACATGTCTAGTGGGTCATCAAATGAGCGCTTGCCATCTAATGTTGGATCTGGTTCATTTTTGCTTCCTTCTGCAAATAGTGGCTTCCTGGTAGAAGGTTCTGATGGTAGGCCAAGTTCTCTTGATACTCGACGAGTCTCTTGTAAAAGAAAGGCTCTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGACAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCTCAGAGCAGGTGAATGCAAGACTTGGCCTGGGAATGGGGAATGAAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGATTGAGGTTAAATCCTTTGAGTCAACAAAGTTCTGTTCCTCCCACAGCATTCTCAACTGGGAGCACAATTAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCCGTTGATAATTCTCTGAACTTGAGATCAGCTCCACCAATAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAGTCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATGCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAGCTCAAGGCGAATGTCTAGAAATATTTTGGAGCATCCTGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTCTCTTCTTCATCACGGACTGGATCCAATCCAGCTACCAACCCCTCTCCTGCCTCAAATTGGGTATCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATCCTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGTTCTGCTCTTTCAACCTCTGAGCCAAGGCCATTATCATCTGGGACTGGGGCAAATCCAAGATCATCTCCATGGATGGATAGGCAAGGGGAAAGTGAATTTGGAATTCCTTATTCACTGCGTGCTCTGGATGTTGCAAGTGAAGGGGGGAGTAGTAGACTAGTCTCTGAGCTCCGCAATATGTTGGGCATTATGCGTAGAGGTGGGAATGTGCGATTCGAGGATGTTGTGATCCTTGATCATCAGTCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAGCCGTATTGAAACTCTTGAAACAGAAAAAGCACTCGGTTGAAAGCGAATCTCCGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAAGATTATGGTGATGGAGATGATATCGGAACGCTTGACTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2124 0.4388 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGNMNSPYVNSIDHEWQNLSGWSLGEPSSSNTPNEINNNEPKREVGWTSTITAGALPGARLEERRLEPTNTLSLDNDNTSAVYMRSPESRLMSQNLNLNAGLADSGDDNSQHLELPNLHMSSGSSNERLPSNVGSGSFLLPSANSGFLVEGSDGRPSSLDTRRVSCKRKALEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGNEASENVPDSNIAGSSESFHRNFRLRLNPLSQQSSVPPTAFSTGSTIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHASNPVICADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVSSSSRTGSNPATNPSPASNWVSRPNPPQHPRRLSEYVRRSLFSPGSDPIGNPSNAYSSLRSALSTSEPRPLSSGTGANPRSSPWMDRQGESEFGIPYSLRALDVASEGGSSRLVSELRNMLGIMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEAVLKLLKQKKHSVESESPIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02243 707 MobiDBLite consensus disorder prediction 309 339 - -
Vian4g02243 707 MobiDBLite consensus disorder prediction 377 407 - -
Vian4g02243 707 SUPERFAMILY RING/U-box 648 703 - -
Vian4g02243 707 SMART ring_2 660 700 IPR001841 -
Vian4g02243 707 MobiDBLite consensus disorder prediction 73 92 - -
Vian4g02243 707 MobiDBLite consensus disorder prediction 220 240 - -
Vian4g02243 707 MobiDBLite consensus disorder prediction 221 240 - -
Vian4g02243 707 MobiDBLite consensus disorder prediction 496 535 - -
Vian4g02243 707 FunFam E3 ubiquitin-protein ligase MBR2 628 705 - -
Vian4g02243 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Vian4g02243 707 MobiDBLite consensus disorder prediction 377 391 - -
Vian4g02243 707 Pfam Ring finger domain 660 701 IPR001841 -
Vian4g02243 707 MobiDBLite consensus disorder prediction 432 475 - -
Vian4g02243 707 MobiDBLite consensus disorder prediction 432 539 - -
Vian4g02243 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 197 705 IPR045191 GO:0061630
Vian4g02243 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Vian4g02243 707 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02243 Vian-Chr4 39282535 39287521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02243 1 707 C3H Transcription Factor Family AT2G15530 33.067 2.42e-76 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02243 4 39282535 39287521 Vian4g02243 4 39282535 39287521 ECH
Vian7g00713 7 15365149 15368523 Vian4g02243 4 39282535 39287521 PCT