Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02228 ATGCGGACAAGTAGATCTTCCGCGCCTACGATCCTCATCGTGCTCTTCACGGTCTTCACAGTGTCTTCCGCGTTGGACCTGTCCATAATCTCATACGACAGAACCACCTACGCCGACAAGACAGCCCGGAGAAGCGACAAGGAGGTGAGAACCATATACGAGGAGTGGCTTGTGAAGAATGGCAAGCTGCATACCACCCTCGACCAGAAAGAGAAGAGGTTTCAGATTTTCAAAGACAACCTCAAGTTTATCGACGACCACAATGCTGAAAACCGGACATACAAGGTTGGACTGAACCGGTTCGCCGATCTTAACAACGATGAATACCGGTCCAAGTACCTGACAACCAAGATTAACCCCCAGAGGATGATGGCAAAGCCAAGCGCTGATGGTATATGCGATCAATATAAGCAAAATGCTAGAGCTGTTACAATTGATGGTTATGAACGTGTTCCTGCCTACGATGAGTTAGCCTTGAAAAAGGCAGTAGCAAATCAACCGGTGAGCGTTGCCATTGAAGCATATGGCAGAGAGTTTCAGTTATATGAATCTGGTATATTCACAGGAACATGTGGTACTTTTATCGATCATGGTGTAGCAGCTGTTGGTTACGGCACAGAAAATGGAACTGACTATTGGATCGTGAAGAATTCATGGGGTGAGAAATGGGGAGAAGCAGGTTATGTAAGAATGGAACGCAATATAGCAGAAGACACTGCAGGGAAGTGCGGAATTGCGATTCTGTCATTCTATCCCATAAAGAGGGGCCAAAATCTCTCAAACCCTGTCAACCCACTGGGAATTTACATGTAG 813 0.4637 MRTSRSSAPTILIVLFTVFTVSSALDLSIISYDRTTYADKTARRSDKEVRTIYEEWLVKNGKLHTTLDQKEKRFQIFKDNLKFIDDHNAENRTYKVGLNRFADLNNDEYRSKYLTTKINPQRMMAKPSADGICDQYKQNARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGREFQLYESGIFTGTCGTFIDHGVAAVGYGTENGTDYWIVKNSWGEKWGEAGYVRMERNIAEDTAGKCGIAILSFYPIKRGQNLSNPVNPLGIYM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02228 270 CDD Peptidase_C1A 130 252 IPR039417 -
Vian4g02228 270 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 195 205 IPR025660 -
Vian4g02228 270 Pfam Papain family cysteine protease 131 253 IPR000668 GO:0006508|GO:0008234
Vian4g02228 270 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Vian4g02228 270 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 133 246 IPR013128 GO:0008234
Vian4g02228 270 SMART pept_c1 52 253 IPR000668 GO:0006508|GO:0008234
Vian4g02228 270 SMART Inhibitor_I29_2 53 109 IPR013201 -
Vian4g02228 270 Gene3D - 31 117 - -
Vian4g02228 270 SUPERFAMILY Cysteine proteinases 46 253 IPR038765 -
Vian4g02228 270 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 212 231 IPR025661 -
Vian4g02228 270 Gene3D Cysteine proteinases 124 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02228 Vian-Chr4 39093050 39095268 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02228 4 39093050 39095268 Vian1g01631 1 18556041 18558328 ECH
Vian4g02228 4 39093050 39095268 Vian4g02228 4 39093050 39095268 ECH
Vian7g00698 7 15181748 15185031 Vian4g02228 4 39093050 39095268 PCT