Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02186 ATGTTGTGCGCCTGTTCTTCCGGTGGGCAGTTCAAATTCGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGAACACCGGGGAATGGGAGCCTAAATTCGATGAAACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAGGCCAGGGCTTTATTGGGGAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACCCCGAGAATGATCAAGGCTATTGCTGAAAGAATCAAGCAAAGGAAACCACGTTCTAAGGCAGATATCGTGGGTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCACTGGAGGAACTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAATCTGCCCTTCCGAATGGAATGCCTGAGGGTATTGGAGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCAGGATTTCTGGATGAAGCTGTAGCTGCATATCGTCGTGCTCTGGTCAAGCCATGGAGTTTGGATCCACAAAGGTTGGCTTCTGTAGAAAAGGATTTAGCTACGATACTACTCTATGGAGGTGTAGAAGTTAGCTTATCCTGTCAGCAGCAGGTGTGGGGTAAAACAACTCCTACCAACAGTGTTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTCACTGGCATGTTTGAGTTACTTGCGGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTTTAGTGCAGCAGGACTTGATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTAGATCCTCGCCATGCTCATGAAGGCATTAACTTCTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATAAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGAATCTGCTATGGTGCTGCAGCTAGAATTTCTGTACTCGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTTCCGTAAATGGAAATGATGACTTGGAAGCAATATTCAACCTTGGATTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGACGTTCTCAGACATGAGTGCTGGCAGTTCGAGAGGTTGGCAGCTGTTAGCACTTATAGTATCTGCACTGCAGCGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTGTACTTCAAATTTCTCAACAGCAACCCAGGCAAGCAATAGAGACATTTCGAATCTTGCTTGCGTTAATTCAAGCAAAAAAGGAGTTTTGGCTTCAAAAAAACAACATTGATCGAGAACAAGCATTCAGGCATGAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACAATTTATACAGATATCGGTTGCTTGCTCGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATAGCAGGGGTGGTGCTTGAAGCTCAATCATTATACAGAGAAGCATTTGTTTCCTTTTCAATATCATTGGCAGTAGAACCAGATTACATTCCCAGTATCATTTCTACCGCAGAATTATTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCACGATGCTTGGTTCAACCTTGGCTTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2133 0.4276 MLCACSSGGQFKFEEPPQSPDSLATRDFSASGLSSRNTGEWEPKFDETQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERIKQRKPRSKADIVGSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHKALELLPRLWIKAGFLDEAVAAYRRALVKPWSLDPQRLASVEKDLATILLYGGVEVSLSCQQQVWGKTTPTNSVEEAIHLLVILMSKVAIGEIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCFSAAGLDEVALNLLRKACGSSEANHRPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNKHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNCASVNGNDDLEAIFNLGLENAIQRNLDAAYNNIMTFSDMSAGSSRGWQLLALIVSALQRFKDAETIVDFALDEAGGMDQLDLLRLKAVLQISQQQPRQAIETFRILLALIQAKKEFWLQKNNIDREQAFRHELEMEAWQDLATIYTDIGCLLDAKTCVDKAQLIEFFSPRSWHIAGVVLEAQSLYREAFVSFSISLAVEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02186 710 MobiDBLite consensus disorder prediction 5 46 - -
Vian4g02186 710 Gene3D Tetratricopeptide repeat domain 421 550 IPR011990 GO:0005515
Vian4g02186 710 Gene3D Tetratricopeptide repeat domain 551 654 IPR011990 GO:0005515
Vian4g02186 710 SUPERFAMILY TPR-like 428 594 IPR011990 GO:0005515
Vian4g02186 710 Gene3D Tetratricopeptide repeat domain 31 252 IPR011990 GO:0005515
Vian4g02186 710 MobiDBLite consensus disorder prediction 22 38 - -
Vian4g02186 710 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Vian4g02186 710 SUPERFAMILY TPR-like 568 701 IPR011990 GO:0005515
Vian4g02186 710 SUPERFAMILY TPR-like 48 497 IPR011990 GO:0005515
Vian4g02186 710 Gene3D Tetratricopeptide repeat domain 655 706 IPR011990 GO:0005515
Vian4g02186 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Vian4g02186 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Vian4g02186 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Vian4g02186 710 SMART tpr_5 476 509 IPR019734 GO:0005515
Vian4g02186 710 SMART tpr_5 319 352 IPR019734 GO:0005515
Vian4g02186 710 Pfam Tetratricopeptide repeat 49 91 - -
Vian4g02186 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Vian4g02186 710 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02186 Vian-Chr4 38669417 38672683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02186 1 709 Calmodulin-binding Proteins AT1G27460 59.467 0.0 854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02186 4 38669417 38672683 Vian4g02186 4 38669417 38672683 ECH
Vian7g00664 7 14711404 14714164 Vian4g02186 4 38669417 38672683 PCT