Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02182 ATGGCATTTGCAGGAACAACTCAGAAATGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAATCGAGTGTTCCACAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTCGAGGGAGTTCTTTACTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGACAAAACTGGCGAAGAGAAACCTGCAGCAACCAAGGTCTTGAATATGTTTGGTGGAACCAGAGACAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTGACGGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCTAATTACATTGCACACGATGGAAAACTCTACTGCAAACACCATCACATTCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACAATGAGAAGAGTACAATTCAAGAGAAAACCAACGGGGAAGTAGTTGCAGCTGAGACATGA 591 0.4264 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPDKTGEEKPAATKVLNMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDNEKSTIQEKTNGEVVAAET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02182 196 Pfam LIM domain 109 163 IPR001781 -
Vian4g02182 196 Pfam LIM domain 10 64 IPR001781 -
Vian4g02182 196 MobiDBLite consensus disorder prediction 173 196 - -
Vian4g02182 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Vian4g02182 196 Gene3D Cysteine Rich Protein 104 173 - -
Vian4g02182 196 Gene3D Cysteine Rich Protein 4 74 - -
Vian4g02182 196 SMART lim_4 9 61 IPR001781 -
Vian4g02182 196 SMART lim_4 108 160 IPR001781 -
Vian4g02182 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vian4g02182 196 PANTHER OS06G0237300 PROTEIN 4 93 - -
Vian4g02182 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vian4g02182 196 FunFam LIM domain and actin-binding 1 103 173 - -
Vian4g02182 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Vian4g02182 196 CDD LIM1_SF3 6 68 - -
Vian4g02182 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vian4g02182 196 CDD LIM2_SF3 109 169 - -
Vian4g02182 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Vian4g02182 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vian4g02182 196 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02182 Vian-Chr4 38651453 38653087 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vian4g02182 LIM 2.6e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02182 4 38651453 38653087 Vian4g02182 4 38651453 38653087 ECH
Vian7g00660 7 14693362 14694751 Vian4g02182 4 38651453 38653087 PCT