Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01427 ATGTTCCCACATACCCTTATTACTGCCGCTGCCCTTCAACACATGTTGCAACATCATCATCACTTTCCAACCCCAATGGAACAACGTTCGAGGTGGAAACCCAACATTGAGGTCGCGCCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTTTGTTACTACAATAACTACAGCTTGTCGCAGCCCCGCTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGAAAGAACCGCCGCGGCAAGTCCTCCTCGCGCCACAACCAAACCCAACGCTCTTTCATCTCCGCTTCTTCTTATGACACCGAGTCTTCACCCGAAGATGCCCATCGAAACAACAACGGCTCTCGTGAAATAGACATGGCCCTTGTGTTCGCCAAATTCTTGAACCCAAAACAAAACGTTGGAGAGGATAACAATGCCTCCTCTTCTTCCAACAATTACTTCACACCGCCCGGCGTTCAAACGGAGAATGATATCGCTGGTGTTCAGTCGCCGAACAAGGGTTTGTCGTCGGATCCTGTCATTGTTGACTCCGATGCAGTAGTGGCAATTGAGAATTTCGGTAGGGAGGAATTGAGTTTGGGTGAGATTGACGAGTTGGAGAAGCTTCTGGGTGTGAGTGGTGATGAAGATGGTCTCTGGTGTGATGCTACCTTGTCCTCTTCCGTTACTTGGGAAGCACCCGTGAAGGAAATGCAGTTGCAGGAATTGGAATACTCGATGCCGTTGAATGAAAACGATGCCCAATTATTACCCATCACTTCTGCGTCTACCCTGCATTCAATGAGTGACACTTGCTGGAGCACTTGGAGCTCCTTTGATCTTTCAGCCATGGAAATGTTCTCATCAACTCCTTGA 903 0.5028 MFPHTLITAAALQHMLQHHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRGKSSSRHNQTQRSFISASSYDTESSPEDAHRNNNGSREIDMALVFAKFLNPKQNVGEDNNASSSSNNYFTPPGVQTENDIAGVQSPNKGLSSDPVIVDSDAVVAIENFGREELSLGEIDELEKLLGVSGDEDGLWCDATLSSSVTWEAPVKEMQLQELEYSMPLNENDAQLLPITSASTLHSMSDTCWSTWSSFDLSAMEMFSSTP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01427 300 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vian4g01427 300 MobiDBLite consensus disorder prediction 101 117 - -
Vian4g01427 300 MobiDBLite consensus disorder prediction 84 129 - -
Vian4g01427 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 167 IPR045174 GO:0003700|GO:0006355
Vian4g01427 300 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Vian4g01427 300 Pfam Dof domain, zinc finger 40 94 IPR003851 GO:0003677|GO:0006355
Vian4g01427 300 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01427 Vian-Chr4 28773575 28774477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01427 32 292 C2C2-Dof Transcription Factor Family AT3G52440 38.603 1.19e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian4g01427 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01427 - - vra:106778892 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01427 4 28773575 28774477 Vian4g01427 4 28773575 28774477 ECH