Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01349 ATGGCCCTCTCAACTCCACACATGCAAAGATTCCTCTCGTGCAAGATCCACAGTCGCTCCACCTCTAAGACCACGCAGAGAAACACTTTCAGCACCACCAGCAGGGGCCGCTGCTGCTCTGCCATAGCCATTGATGCTCCATCTTCTTTAACTGAGGTGCCCGGTGTACGATGGGGGTCCATAGCCTTGCAAGGTCTCCGCGAAGAGATGGAGGATGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCCGCTGTCTTCGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCTAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGGAGAAAGATTTCAAAGCCATTAAAGGAGCATTGCAGGAGGCATTTCTCAAGGCAGACACGAGATTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCCACAGCAACTGCCATTTTCATCGGAGATGATGCTCTTCTAATTTCACATATCGGTGACTCTTCTGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAACAAAACTTCTCTTGATGAAATTAGAAGAATAAGAGAAGCAGGTGGATGGATTAGCAACGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACATGCGATTCAAAACGAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGAGTACAGCTCAACAATGACTTGGTTGTAGCGTACCCTGATATTTATCAGGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCAACCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTTAGGGATCAACTACGAAAACATGGAAACATTCAGCTAGCATGTGAATCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCAGATTTAGGGAGGACAGACTGGCAGAATGTGCCACTGGAGCAAAAAAATACTATAGTTGAGCTGGTTCAAGCTCTTGCTACCATTGGAATTGTGTCTTTTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG 1173 0.4569 MALSTPHMQRFLSCKIHSRSTSKTTQRNTFSTTSRGRCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLSANYRDELYKECVEALQGGLLLVEKDFKAIKGALQEAFLKADTRLLKRLEMNGEEDESGATATAIFIGDDALLISHIGDSSAVLCRSGKAEVLTSPHRPYGSNKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDMRFKTKKNEMLQKGVQEGKWSAKFISRVQLNNDLVVAYPDIYQVALGSDAEFVVLATDGLWDYMSSSEAVSLVRDQLRKHGNIQLACESLAEAALDRRTQDNVSIIIADLGRTDWQNVPLEQKNTIVELVQALATIGIVSFGIWFSSQLSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01349 390 SMART PP2C_4 47 347 IPR001932 -
Vian4g01349 390 SUPERFAMILY PP2C-like 49 350 IPR036457 -
Vian4g01349 390 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Vian4g01349 390 ProSiteProfiles PPM-type phosphatase domain profile. 57 349 IPR001932 -
Vian4g01349 390 FunFam Protein phosphatase 2C 57 56 356 - -
Vian4g01349 390 PANTHER PROTEIN PHOSPHATASE 2C 32 347 IPR015655 GO:0004722|GO:0006470
Vian4g01349 390 Gene3D - 56 356 IPR036457 -
Vian4g01349 390 CDD PP2Cc 64 349 IPR001932 -
Vian4g01349 390 Pfam Protein phosphatase 2C 59 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01349 Vian-Chr4 27352136 27356096 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01349 4 27352136 27356096 Vian4g01349 4 27352136 27356096 ECH
Vian4g01349 4 27352136 27356096 Vian7g00778 7 16053787 16055477 PCT