Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01259 ATGGAGATTTTGGATGATGATCGTGTGGGTTTCGAGAATGTTATTGTGTATGCGTTGAACTTAAAAAACGATGGTGCTGGAATGACGTGTCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGCGGCTGCTGGAAAAACAAAAATATCGGCGTGGCGAACTCAATCGTTGCATCTGAGAGTGGATCTGGACCGAATCTGGAGCGGATCTGTAGTGGATCTGGAGCAGATCTGGACGAAGCTGGCGGTGAGGGTTGGACGAACCTGGCGGTGGATCTGGACGAAGCAGATATGGAGCGGATCTGTAGTGGATCGATGATGTTCTCGAAACAAGAAAAGTACATCGTTGATTCCATTGGCTTCTATTCTGTATTGTTATCCCATTGGTTTTACCGCTACAACTGA 420 0.4929 MEILDDDRVGFENVIVYALNLKNDGAGMTCRRYWTKGGALRNVPIGGGCWKNKNIGVANSIVASESGSGPNLERICSGSGADLDEAGGEGWTNLAVDLDEADMERICSGSMMFSKQEKYIVDSIGFYSVLLSHWFYRYN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01259 139 Pfam Dof domain, zinc finger 29 54 IPR003851 GO:0003677|GO:0006355
Vian4g01259 139 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 64 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01259 Vian-Chr4 25512017 25531940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01259 29 130 C2C2-Dof Transcription Factor Family AT5G60200 36.893 7.30e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian4g01259 zf-Dof 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01259 - - var:108339373 75.8701