Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00853 ATGGGGTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGCTGCAGAAAGAACAAGAAAGTCTCTGCAAAAAAATCCAATGACCACTCATTAGTTAACAATCAAATTAGTCAAACACAGCCCCCACCCTCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTTCCAGATGTACAATTTTCCCACCTCAGCAACTTGCTTGGGACGAATGCAGGGTCACTGGGAAACCCTGGCTTTATGGAGGGTAAGTATGGTATTGGCATGATCGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGCTGGAGGGCATAATTGGGAGTGGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGACATGGGCATGGGTGCTGGGCTGGGAGATATGCATGGTAATGCTCAAAATGGGTTGCCACCAAATTTTCACGGTCTTTGCCCCTCAGCTTTTGGTGGCATGTCTATGTCTCTTGATGGCAACAACACTGGCAATGGTGCTAATAACTACTTAATGGACTCTTGCCAACGCTTGATGCTGCCATATGATGCCAATGAGGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAGCTACTGTCCCTCGAATGGCAAGACCAGGGTTGCTCTGATGCAGGCAAAGATTCCTTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1017 0.4739 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHSLVNNQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTNAGSLGNPGFMEGKYGIGMIENPRPIDFMMESKLEGIIGSGSSRNFDFFGNSDMGMGAGLGDMHGNAQNGLPPNFHGLCPSAFGGMSMSLDGNNTGNGANNYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00853 338 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Vian4g00853 338 MobiDBLite consensus disorder prediction 108 140 - -
Vian4g00853 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 201 IPR045174 GO:0003700|GO:0006355
Vian4g00853 338 MobiDBLite consensus disorder prediction 118 140 - -
Vian4g00853 338 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Vian4g00853 338 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00853 Vian-Chr4 11631940 11633355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00853 1 197 C2C2-Dof Transcription Factor Family AT5G62940 49.550 2.18e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian4g00853 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00853 - - gmx:778107 592.423