Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00606 ATGGATGAGAGGATCACAAATGGAAATTGGATCAGTGAACCTCATGCCGATGTAATCCACAGGTTCCTGCAGTTGTTGGCTGTATGCCATACTGCAATACCTGAAATTGATGAAGAAAATGGAAGAGTTTCATATGAAGCTGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCAGAGAACTTGGGTTTGAGTTTTATGAAAGGACACAGACAACTATCTCACTGCGTGAGTTCAATCCCAAATCAGGCAAAACAACTGAAAGGTCCTACAAACTTTTGAATATACTAGAGTTTAGTAGCACAAGAAAGCGGATGTCTGTAATTGTAAGAGATGATGAGGGGAAATTGCTACTATTTAGCAAAGGAGCAGACAGTGTCATGTTTGAACGTCTTGGAAGGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTGATGAATATGCTGATGCTGGTCTGAGGACCTTGATACTTGCATATCGGGAACTTGGTGAAGAAGAGTACAATACATTCAATAAAGAATTTATGGAGGCCAACAACTTAGTAAGTGCTGATAGAGAGCAAATTGTGGAGGAAGTATCAGAAATGATTGAGAAGGAGTTAATTCTTCTTGGTGCTACTGCGGTCGAAGACAAGCTTCAAAATGGGGTTCCTGAATGCATCGACAAGCTAGCTCAGGCAGGAATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATGTTGGGTATGCATGTAGTTTGCTCAGACAAGGAATGAAGCAAATTATAATCAGTTCAGACACTCCAGAAATCAAATCATTGGAGAAAGTGGAGGACAAGTCTGCTGCAGCAGCGGCAATCAAGGAAAGTGTTATTCTTCAACTAAAGAAAGGAAAGGAATTACTTTCTGAATATGATGAAAACTCTGAGGCATTAGCTCTTATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTGAAGGACCTTTTTCTTGCACTTGCTGTTGGCTGTGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTCGTTACTAGACTGGTGAAGGTTAAAACTTGTAGCACAACTCTAGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTTCAAGAAGCTGACATTGGGATTGGCATAAACGGTGTCGAAGGAATGCAGGCAGTTATGTCAAGCGATATTTCCATTGCCCAATTTCGGTTTCTAGAGCGTTTACTACTTGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGCTTTACCCTCTTCTTCTATGAGATCTACGCCTCGTTCTCAGGGCAAGCTGCATACAATGATTGGTACCTCTCACTATATAACGTATTCTTCACTTCCCTTCCGGTAATTGCCTTAGGAGTATTTGACCAGGATGTTTCTGCTAGATTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTGCAAAATGTGCTGTTCAGCTGGAAACGGATTCTCGGTTGGGCATTTAATGGAGTATTGAGTGCTACCATAATATTCTTCTTCTGCATCAACGCAATGGAGAATCAAGCATTCCGCAAAGCAGGGGAAGTTGCTGATCTGGAAGTTCTTGGTGCAACCATGTACACTTGTGTGGTGTGGGTGGTGAATTCCCAAATGGCACTATCCATCAGTTACTTCACTTACATTCAGCATTTGTTCATATGGGGTGGCATTATTTTCTGGTACATATTCCTGATAGTGTATGGAACAATGGACCCCACTCTATCAACCACTGCCTATAAGGTGTTGATTGAAGCTTGTGCACCAGCACCATCATACTGGCTCCTCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTCGCCTATGCTGCAATCCAAATGAGGTTCTTCCCCATGTTCCATCAGATGATACTGTGGATTCGAAATGATGGGCAAACGACTGACCCAGAATACGTTCATGTTGTCAGACAGAGATCAATAAAACACACAACAGTTGGCTTCACGGCACGTTTTGAAGCATCGCAGAGTTCGGGAGCATCAAAGAGTATTCAAGTTTGA 2109 0.4211 MDERITNGNWISEPHADVIHRFLQLLAVCHTAIPEIDEENGRVSYEAESPDEAAFVVAARELGFEFYERTQTTISLREFNPKSGKTTERSYKLLNILEFSSTRKRMSVIVRDDEGKLLLFSKGADSVMFERLGRNGREFEEKTKQHIDEYADAGLRTLILAYRELGEEEYNTFNKEFMEANNLVSADREQIVEEVSEMIEKELILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINVGYACSLLRQGMKQIIISSDTPEIKSLEKVEDKSAAAAAIKESVILQLKKGKELLSEYDENSEALALIIDGKSLTYALEDDVKDLFLALAVGCASVICCRSSPKQKALVTRLVKVKTCSTTLAIGDGANDVGMLQEADIGIGINGVEGMQAVMSSDISIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWYLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCINAMENQAFRKAGEVADLEVLGATMYTCVVWVVNSQMALSISYFTYIQHLFIWGGIIFWYIFLIVYGTMDPTLSTTAYKVLIEACAPAPSYWLLTLLVLVASLLPYFAYAAIQMRFFPMFHQMILWIRNDGQTTDPEYVHVVRQRSIKHTTVGFTARFEASQSSGASKSIQV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00606 702 Pfam Phospholipid-translocating P-type ATPase C-terminal 398 648 IPR032630 -
Vian4g00606 702 FunFam Phospholipid-transporting ATPase 48 206 - -
Vian4g00606 702 Pfam Cation transport ATPase (P-type) 29 132 - -
Vian4g00606 702 Gene3D - 45 205 IPR023299 GO:0000166
Vian4g00606 702 FunFam Phospholipid-transporting ATPase 206 410 - -
Vian4g00606 702 NCBIfam phospholipid-translocating P-type ATPase 2 654 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vian4g00606 702 SUPERFAMILY HAD-like 145 425 IPR036412 -
Vian4g00606 702 Gene3D - 206 410 IPR023214 -
Vian4g00606 702 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 659 - -
Vian4g00606 702 SUPERFAMILY Calcium ATPase, transmembrane domain M 350 648 IPR023298 -
Vian4g00606 702 NCBIfam HAD-IC family P-type ATPase 334 453 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00606 702 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 5 176 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00606 Vian-Chr4 7324273 7327815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00606 2 702 Primary Pumps ATPases AT3G25610 70.756 0.0 1062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00606 4 7324273 7327815 Vian4g00606 4 7324273 7327815 ECH