Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00605 ATGTATTGCACATCCCTCTTACAATGTTGTTTTGTTGATTATATTGAGAACATGTCAAAACTTAAGGTTAATCAACTTCGCCAATTAAGAGACATTTTTGAAAAATTTGACACAGATTCTGATGGTAGCCTAACCAATTTGGAGCTAGCCGCGCTACTTCGATCATTAGGGCTAAAGCCTTCAAGTGACCAAATCCATGTGTTATTAATGAACTTGGATTCAAATGGAAATGGATTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTACGTAACATAAGTGCAAAGATATTATTGAACCAAGAAATGTTGCTTGGGGTATTCAAATATTTTGATCGTGACGGAAATGGTTTTATAACAGCCGCAGAACTAGCAGGGGCAATGGCCAAAATGGGTCAACCCCTTACCTATAGAGAGCTTAGAGAGATGATCACAGAAGCTGACACAGATGGGGATGGTGTCATTAGCTTCAATGAGTTTGTCACCGTGATGGGTAGATCAGCCTCTGGCTTCTTAGACTTTGCACTGTTGTAA 534 0.3933 MYCTSLLQCCFVDYIENMSKLKVNQLRQLRDIFEKFDTDSDGSLTNLELAALLRSLGLKPSSDQIHVLLMNLDSNGNGFVEFDELVDAILRNISAKILLNQEMLLGVFKYFDRDGNGFITAAELAGAMAKMGQPLTYRELREMITEADTDGDGVISFNEFVTVMGRSASGFLDFALL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00605 177 PANTHER CALCIUM BINDING PROTEIN 101 164 - -
Vian4g00605 177 SUPERFAMILY EF-hand 17 164 IPR011992 -
Vian4g00605 177 Pfam EF-hand domain pair 104 164 IPR002048 GO:0005509
Vian4g00605 177 Pfam EF-hand domain pair 27 88 IPR002048 GO:0005509
Vian4g00605 177 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Vian4g00605 177 FunFam Probable calcium-binding protein CML15 14 94 - -
Vian4g00605 177 ProSitePatterns EF-hand calcium-binding domain. 112 124 IPR018247 -
Vian4g00605 177 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Vian4g00605 177 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Vian4g00605 177 ProSiteProfiles EF-hand calcium-binding domain profile. 99 134 IPR002048 GO:0005509
Vian4g00605 177 Gene3D - 11 96 - -
Vian4g00605 177 ProSitePatterns EF-hand calcium-binding domain. 37 49 IPR018247 -
Vian4g00605 177 Gene3D - 97 174 - -
Vian4g00605 177 CDD EFh 103 164 IPR002048 GO:0005509
Vian4g00605 177 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Vian4g00605 177 ProSiteProfiles EF-hand calcium-binding domain profile. 24 59 IPR002048 GO:0005509
Vian4g00605 177 SMART efh_1 64 92 IPR002048 GO:0005509
Vian4g00605 177 SMART efh_1 103 131 IPR002048 GO:0005509
Vian4g00605 177 SMART efh_1 28 56 IPR002048 GO:0005509
Vian4g00605 177 SMART efh_1 139 167 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00605 Vian-Chr4 7320204 7320737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00605 24 168 EF-hand Containing Proteins AT1G18530 73.793 1.29e-76 224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00605 4 7320204 7320737 Vian4g00605 4 7320204 7320737 ECH