Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00589 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTAACGTTCTCGAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGCATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCTGAGAGGCAGCTTGTTGTAAGTGATCAACCACAAAGTGAAAATTGGACTCTTGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTTCTACAGAAAAATCAAAGAAATTTTATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCAGCACAACAAGCACAGTTTGAGCGACAAGCTGATGAAATGGATCTAGCCTCCTCTGTCCTCGTACCTCAACCATTGGAGACATCTAATATTAGAGGGTCGTCACAAGTAGGTGGTGATGAAGGAGACAATGATGGAATGGTAACTCCAAGCCGAGCAAATGCGATTCTTCCACCGTGGATGCTTCGTCCTACAAATGAATAG 741 0.4278 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVVSDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNTLAKKIKEKEKALAAQQAQFERQADEMDLASSVLVPQPLETSNIRGSSQVGGDEGDNDGMVTPSRANAILPPWMLRPTNE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00589 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 Coils Coil 125 145 - -
Vian4g00589 246 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vian4g00589 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 Coils Coil 151 192 - -
Vian4g00589 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g00589 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vian4g00589 246 Coils Coil 88 108 - -
Vian4g00589 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vian4g00589 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vian4g00589 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian4g00589 246 MobiDBLite consensus disorder prediction 206 246 - -
Vian4g00589 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vian4g00589 246 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00589 Vian-Chr4 7057016 7064323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian4g00589 K-box 1.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00852 1 8878666 8883063 Vian4g00589 4 7057016 7064323 ECH
Vian2g00270 2 2813126 2818337 Vian4g00589 4 7057016 7064323 ECH
Vian4g00589 4 7057016 7064323 Vian4g00589 4 7057016 7064323 ECH
Vian1g02034 1 24417685 24423215 Vian4g00589 4 7057016 7064323 PCT