Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00583 ATGCAGGATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGACAGCACCACCAGCACCACCACCAGCCGCTAAAGTGTCCACGCTGTGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGTTGCCGCAAGTCCAAACGCTCCAACAAACCCAAAACTACCGCCAACAACACCAACGATAGCAGCAATAACAACAACAACAATCCTTCCCCTTCCTCGCAGATCGCTCCGGCAACCGCGTCCACGACGCCGTCGGCTGCGGAGCCGGAGCGCAACTCGAACTCCCACTCCAGCAGCGAAAGCTCCACACTAACCGTCACGGAGGCGATGTCGGCGCCGACATCGAACACTTTGTCTAGCAACGCTTTGTTCCTGGACAACGTCCGCGAGCCGAAGCTGTTCGCTAACGCTAATAACCCATCTTTGGAGGGCGGTGGCGTTTTCTCTGAGATAGGGAGCTTCAGCAGCCTCATTGCTTCAAATAACGAAGCATTGGGGTTTGGGTTTGGGAAACGCAGTAATAACAACGGCAACAGCAACAGCAACATCCTCGATGCGACGACGTTTCGGTTCGGCGTTACTCATCCGCAGGGGAATAATAATGATCAGGTGCAAGTGGCGGGCGGTAGAGAGCAACAGCAGAATCATGAGGAGTTCGGTACGGCGTCGTTTCTCGATCTGACGGCGCCGCTGGAGTTTTCTTCGTTGGCGCAGAAGAGTGGTCATCATGGAGGGTTTGGGTCGTTGGATTGGCAAGCCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCAACCGTACTGGAGCCACAGTCATTGGTCCGATCAAGATAATCCCTCTCTCTTTCACCTTCCTTGA 963 0.5493 MQDIHSICGGDRRLRQHHQHHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTANNTNDSSNNNNNNPSPSSQIAPATASTTPSAAEPERNSNSHSSSESSTLTVTEAMSAPTSNTLSSNALFLDNVREPKLFANANNPSLEGGGVFSEIGSFSSLIASNNEALGFGFGKRSNNNGNSNSNILDATTFRFGVTHPQGNNNDQVQVAGGREQQQNHEEFGTASFLDLTAPLEFSSLAQKSGHHGGFGSLDWQAGADQGLFDLPNTVDQPYWSHSHWSDQDNPSLFHLP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00583 320 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Vian4g00583 320 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Vian4g00583 320 MobiDBLite consensus disorder prediction 69 145 - -
Vian4g00583 320 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Vian4g00583 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 229 IPR045174 GO:0003700|GO:0006355
Vian4g00583 320 MobiDBLite consensus disorder prediction 83 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00583 Vian-Chr4 6972341 6973303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00583 11 320 C2C2-Dof Transcription Factor Family AT5G60850 39.241 6.03e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian4g00583 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00583 - - vun:114196340 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00583 4 6972341 6973303 Vian4g00583 4 6972341 6973303 ECH
Vian1g00859 1 8939757 8940614 Vian4g00583 4 6972341 6973303 PCT