Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00200 ATGGCGCCAGGAGCGGGAGGCTTGCAGCTCACTTCAGTCGCCGGTAATAGTAGAGCCGCCACAGCTGACTCCGATGACCTCGAGGATGTGCGGCTCTTGGACTCCTACGACAAAATCGACGCCGAAGCGAGGCGGATTCAGGTGACGGTCACTGGAATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTTGACGGAGTTATCAGCGCCTCCGTCGCACTGCTTCAGAACAAAGCCGAGGTAGTTTTCAACTCGGCTCTGCTCAAGTGGTGGTGGGGTTACTTGAACTTGGATATGAAACCAGGTTTTTTGGGGTCGTCAGGTACAGGTGATCCCTGTGATGAAGACATTAAAAATGCAATTGAAGATGCTGGGTTTGAAGCCGACATATTACCTGAATCCAGTACTGTTGGAAAGATGCCACATGGAACCTTGGTGGGACAGTTCACAATTGGAGGAATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTTAGGTGAAGTTGAATATGATCCCAGTGTAATTAGTAAAGATGATATAGTCAACGCGATTGAAGATTGTGGTTTTGATGCTTCATTTTTACAAAGCAATGAACAGGATAAAATAATCTTAGGGGTGGTTGGTGTGTACAGTGTGATTGATGGACAAGTTTTAGAAGGCATTATTAGCAGCATAAAAGGAGTCAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCGGAAGTTCTCAGTTCTAGATTCTTAGTTGATGCAATCCAGGGCGGAAGCAATGGGAAGTTTATATTACATGTTAGAAGCCCTTATACGAGAATGGCTTCTAAAGGCGTTGAAGAGATCTCAACTATATTTCGGCTCTTTGTCTCTAGTTTGTTACTTAGTATTCCTCTCTTCTTCGTGAGGGTAGTTTGTCCTCATATACCAATGGTGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTCCTCATGAGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATTCAATTTGTGATCGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTTGTTGCAGTGGGTACTACCGCGTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCGACTGCTTTACTAGTTGTCAAAGATAAAGGTGGTAAATGTATTGAAGAAAGGGAAATTGATTGTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATCCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAATCTGTGCCTATTTTAAAGGAGGTGAATGCTTCTGTTATTGGAGGCACAATAAATTTGCATGGTGTCCTTCATGTTCAAGCTGCCAAAGTAGGATCTGAAACAGTTCTGAGCCAGATTATTAGTTTGGTTGAGACAGCGCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGATTATGTGGCAAGTATATTTGTTCCATTGGTCGTTTCTTTGGCATTATTGACGTTATTGTGCTGGTACATTGCTGGGTCTATTGGAGCTTACCCAGATGACTGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCGATTTCTGTAGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCCGTGATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATCAAAGGAGGTGATGCATTGGAAAGGGCCCAGAGGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACAGCCAAGACATTCACTGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAATATTATCTTATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTGATACTGGTACTGAGAATGATGCTGGGAATGACGTGAAAACTGGTTGGCTTTTTGACGTCTCAGACTTCTCGGCTCTTCCTGGAAGAGGTGTTCAATGTTTGATAGATGGGAAGCGCATTTTGGTTGGTAACAGGAAGTTGATGGCGGAAAATGGCATACATATTTCAACAGAGGTGGAAAATTTTGTGGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAACATATAATGATATATTAACTGGAGTCTTGGGGATTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGTCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACTGGAGATAACTGGAGAACAGCTCGTGCTGTTGCTAAGGAGGTTAGCATACAAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCTATGGTAGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCAGCTGATGTTGGTATGGCTATCGGAGCTGGAACTGATATTGCAATTGAAGCTGCTGACTATGTGCTGATGAAAAATAATTTAGAAGATGTGATCACAGCCATTGATCTTTCCCGGAAGACCTTCTCTCGAATTCGACTGAATTATGTGTTCGCAATGGCTTACAATGTTGTGGCCATACCAATTGCGGCTGGTGTTTTCTACCCTTCACTGGGGATCAAGCTACCACCGTGGGTTGCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTGCAATACTTGAAATAATTGTAGAATAG 3063 0.4358 MAPGAGGLQLTSVAGNSRAATADSDDLEDVRLLDSYDKIDAEARRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKAEVVFNSALLKWWWGYLNLDMKPGFLGSSGTGDPCDEDIKNAIEDAGFEADILPESSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDCGFDASFLQSNEQDKIILGVVGVYSVIDGQVLEGIISSIKGVRQFHFDQISGELDVLFDPEVLSSRFLVDAIQGGSNGKFILHVRSPYTRMASKGVEEISTIFRLFVSSLLLSIPLFFVRVVCPHIPMVYSLLLRRCGPFLMSDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKCIEEREIDCLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINLHGVLHVQAAKVGSETVLSQIISLVETAQMSKAPIQKFADYVASIFVPLVVSLALLTLLCWYIAGSIGAYPDDWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILSYARHFHFFDDSSADTGTENDAGNDVKTGWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMAENGIHISTEVENFVVELEESAKTGILVTYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVSIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMKNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPIAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTAILEIIVE 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00200 1020 NCBIfam heavy metal translocating P-type ATPase 387 1003 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g00200 1020 Gene3D - 152 217 - -
Vian4g00200 1020 SFLD p-type atpase 655 946 IPR044492 -
Vian4g00200 1020 Gene3D - 684 827 IPR023299 GO:0000166
Vian4g00200 1020 CDD HMA 47 133 IPR006121 GO:0046872
Vian4g00200 1020 SUPERFAMILY HAD-like 672 1000 IPR036412 -
Vian4g00200 1020 SUPERFAMILY HMA, heavy metal-associated domain 148 222 IPR036163 GO:0046872
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 894 913 - -
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 509 523 - -
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 819 830 - -
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 841 851 - -
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 673 687 - -
Vian4g00200 1020 PRINTS P-type cation-transporting ATPase superfamily signature 917 929 - -
Vian4g00200 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 408 969 IPR023298 -
Vian4g00200 1020 FunFam Probable copper-transporting ATPase HMA5 781 951 - -
Vian4g00200 1020 SFLD C1.7: P-type atpase like 655 946 - -
Vian4g00200 1020 SUPERFAMILY Calcium ATPase, transduction domain A 474 559 IPR008250 -
Vian4g00200 1020 ProSiteProfiles Heavy-metal-associated domain profile. 44 134 IPR006121 GO:0046872
Vian4g00200 1020 FunFam Copper-transporting ATPase 1, putative 441 563 - -
Vian4g00200 1020 Gene3D - 441 563 - -
Vian4g00200 1020 FunFam Copper-exporting P-type ATPase 774 825 - -
Vian4g00200 1020 Pfam haloacid dehalogenase-like hydrolase 669 908 - -
Vian4g00200 1020 Pfam E1-E2 ATPase 456 652 - -
Vian4g00200 1020 Gene3D - 664 944 IPR023214 -
Vian4g00200 1020 FunFam ATPase copper transporting beta 41 95 - -
Vian4g00200 1020 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Vian4g00200 1020 FunFam Copper-transporting ATPase RAN1 680 773 - -
Vian4g00200 1020 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 28 1012 - -
Vian4g00200 1020 ProSiteProfiles Heavy-metal-associated domain profile. 150 216 IPR006121 GO:0046872
Vian4g00200 1020 FunFam Copper-exporting P-type ATPase A 149 218 - -
Vian4g00200 1020 CDD HMA 153 216 IPR006121 GO:0046872
Vian4g00200 1020 CDD P-type_ATPase_Cu-like 314 990 - -
Vian4g00200 1020 Pfam Heavy-metal-associated domain 154 214 IPR006121 GO:0046872
Vian4g00200 1020 Pfam Heavy-metal-associated domain 48 131 IPR006121 GO:0046872
Vian4g00200 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 675 681 IPR018303 -
Vian4g00200 1020 ProSitePatterns Heavy-metal-associated domain. 156 185 IPR017969 GO:0046872
Vian4g00200 1020 Gene3D - 43 138 - -
Vian4g00200 1020 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Vian4g00200 1020 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Vian4g00200 1020 NCBIfam copper ion binding protein 153 215 IPR006122 GO:0005507
Vian4g00200 1020 NCBIfam HAD-IC family P-type ATPase 764 976 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00200 1020 NCBIfam HAD-IC family P-type ATPase 426 694 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00200 1020 SUPERFAMILY HMA, heavy metal-associated domain 42 92 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00200 Vian-Chr4 1803751 1810669 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00200 4 1803751 1810669 Vian4g00200 4 1803751 1810669 ECH