Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00191 ATGGCAAGAAAATCCTTAGCCTGCTCCTTGCTTTTGGGGATGGCTTGTTCCATAGTAATTGGTTCATATGAAGAGAGCTTGTATCCTGGGACAATTTCAAGTGACAATTATCATGAAGCAATACAACGTTTGCAGTCATTTAAGTTCTCTCTAACTACACCTGATTCCATTGCTTCTGCACCATCTTCCTTATCACCCTTCTCATCCCTTTCTGCTCCTGCTCCTTCTCCTCTCTCACTTCAGGGAGTGAACTATCCACGTGTGTACCATGTAACATCTTATGGTGCGGATCCAACTGGTAGTTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGAAGATGCAGCCAAGGGTCCCAGTGAAGGATATTTGATGCAAGGCATCAAAAATCTTGGAGGCTCCCAGATTAACCTTGAGGGTGGAAATTACTTGATCAGCCAGCCACTCCGGTTGCCGGTGGCCGGAGTGGGGAACCTTATGATACATGGGGGGACGATAAGAGCCTCAGATGGTTTTCCAGCAGATAGCTATATCATTGATTTGTCATCCTCTTCCAACGAAGGAAACATAGATAATTCTTCAGATTCCTACAATTTTGAGTACATAACTCTCAAAGATCTCTTGTTGGACTCAAACTTTAGGGGAGGAGGCATTTCAGTGATAAACTCACTTCGGATTAGCATAGACAATTGTTACATCACACATTTCACCACTAATGGAATTTTAGTCGAAAAAGGCCATGAAACCTACATCAGAAACACTTTCCTTGGTCAGCATATAACTGCTGGTGGGGACAAAAATGAAAGAAACTTCTCAGGCACAGGAATAAACCTCCAGGGTAATGACAATGCCGTCACAGATGTTGTAATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAACGCCTTTTCTGGTGTACATTGTTACAACAAGGCCACTGGCTTTGGAGGCACAGGGATTTATTTGAAACTACCTGGATTAACACAAACTAGAATTGTGAATTCTTACATGGATTACACGAATATTGTGGTTGAAGACCCTGTTCAGTTCCATGTTTCTAGTTGTTTCTTCCTTGGTGATGCCAACATTGTCCTAAAGTCTAAGAATGGGGTTATAAATGGTGTTGATATTGTTGATAACATATTCTCGGGTTCAGATCATGGGGTTGAAATTGTTCAGCTGGACCAATCCAATAATCCTTTCAATCAAATTGAACGAGTTACTGTTGACAGAAACAATGCAAGAGGGATGAAGTTAAAGGCCACAGTTGCAAAAGGGTCCATACAAGGGAATGGAACCTCATGGACTGTTGATTTTAACAACGTTTTACTTTTTCCCAACCTTATAAAACATGTTCAGTACTCTCTAAGCACCCCTGGCAGTACCTTCCCGAATCATATTCTAAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAACGAAGCAGTGCCTGCCAGTGTTTTTGTAACGGTGGACCAAAGTGAGACAAGTTGA 1506 0.4203 MARKSLACSLLLGMACSIVIGSYEESLYPGTISSDNYHEAIQRLQSFKFSLTTPDSIASAPSSLSPFSSLSAPAPSPLSLQGVNYPRVYHVTSYGADPTGSSDSTEALLAAIEDAAKGPSEGYLMQGIKNLGGSQINLEGGNYLISQPLRLPVAGVGNLMIHGGTIRASDGFPADSYIIDLSSSSNEGNIDNSSDSYNFEYITLKDLLLDSNFRGGGISVINSLRISIDNCYITHFTTNGILVEKGHETYIRNTFLGQHITAGGDKNERNFSGTGINLQGNDNAVTDVVIFSAAIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVVEDPVQFHVSSCFFLGDANIVLKSKNGVINGVDIVDNIFSGSDHGVEIVQLDQSNNPFNQIERVTVDRNNARGMKLKATVAKGSIQGNGTSWTVDFNNVLLFPNLIKHVQYSLSTPGSTFPNHILRNVSENRVVIETNEAVPASVFVTVDQSETS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00191 501 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vian4g00191 501 Pfam Pectate lyase superfamily protein 91 317 IPR024535 -
Vian4g00191 501 SUPERFAMILY Pectin lyase-like 87 471 IPR011050 -
Vian4g00191 501 FunFam Polygalacturonase QRT3 91 492 - -
Vian4g00191 501 SMART pbh1 223 245 IPR006626 -
Vian4g00191 501 SMART pbh1 280 301 IPR006626 -
Vian4g00191 501 SMART pbh1 402 424 IPR006626 -
Vian4g00191 501 SMART pbh1 375 396 IPR006626 -
Vian4g00191 501 Gene3D - 88 499 IPR012334 -
Vian4g00191 501 PANTHER POLYGALACTURONASE QRT3 33 499 IPR039279 GO:0004650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00191 Vian-Chr4 1748197 1750293 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00191 4 1748197 1750293 Vian4g00191 4 1748197 1750293 ECH