Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00189 ATGTTTTCCACCACCACCACCACCACAACTTTTCTTCACTCTTGCTTCCTTCTCTCCTGCCTCCTGTCAGCTCTTTCTTGTGTTTCCATGTTCTCTGGTATTGAGACAGGAGATTTAGAAAAAAGAGATGATTTGTTTCCACAGATTCTAAGAGACGAGGCAGTGGCGAGGCTTTATGAGCTTGGGAAGGTGAGTGATGGTAAAAATTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATTAGTCTTATTCGTAGATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACACGGTCGAGTCGAAGGTGCAAATGCAAATGCTGAAGCTTTATTGATTGGTTCTCACATGGACACTGTTGTTGATGCTGGGATGTTTGATGGATCCCTAGGAATAGTCTCTGCAATATCTGCCTTGAAGGCCATGCATGTCAATGGAAAGCTGGAAAAGCTAAAGCGCCCCGTTGAGGTGATTGCATTTAGTGATGAAGAGGGTGTCAGATTTCAAACTACTTTCTTGGGCAGTGGTGCTATAGCTGGTATCTTGCCTGCTACAACATTAGAGATATCTGATAAGAGGGATGTAATGATAAAAGATTTTCTTAAGGAGAACTCAATAGACATTACAGAGGAAAGTCTTTTGAAGCTCAAGTATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAGCAGGGTCCTGTGCTAGAACAAGTTGGTTTCCCACTTGGTGTGGTTAAAGGCATAGCTGGGCAGACACGATTGAAGGTTACAGTTAGAGGATCACAAGGTCATGCTGGAACAGTCCCTATGTCCATGCGCCAGGATCCTATGGCAGCTGCTGCGGAACAAATTGTGGTCTTGGAAAGCCTCTGTAAACATCCTGAAGAATACCTTTCTTATGATGCTCATTGCAGTGATTCAACAGTGAAATCACTGTCAAGCTCACTTGTCTGTACTGTTGGAGAGATATCAACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACATATACGGTTGACATACGAGCAATTGATGACCTTGGACGTGAGGCTGTTATCTATGATTTGTCAAAACAAATTTACCAAATATGTGACAAGCGTTCAGTTTCCTGCATTATTGAACACAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGATCTGAGTTCTCAGCTCAAGTCTGCAACTTATTCTGCACTAAAGAAGATGGAGGGTGACATTCAGGACGAAGTGCCAACATTAATGAGTGGAGCAGGCCATGATGCAATGGCAATATCTCACTTAACAAAGGTGGGAATGCTGTTTGTGCGATGTCGTGGAGGCATCAGTCACTCTCCACAAGAACATGTGCTAGATAACGATGTCTGGGCAGCTGGTTTAGCAACCTTGTCATTTCTGGAAAATCTATCATAA 1452 0.4366 MFSTTTTTTTFLHSCFLLSCLLSALSCVSMFSGIETGDLEKRDDLFPQILRDEAVARLYELGKVSDGKNYLERTFLSPASMRAISLIRRWMEDAGLRTWVDQMGNVHGRVEGANANAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKAMHVNGKLEKLKRPVEVIAFSDEEGVRFQTTFLGSGAIAGILPATTLEISDKRDVMIKDFLKENSIDITEESLLKLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAEQIVVLESLCKHPEEYLSYDAHCSDSTVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKQIYQICDKRSVSCIIEHKHDAGAVICDSDLSSQLKSATYSALKKMEGDIQDEVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAAGLATLSFLENLS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00189 483 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 120 129 IPR001261 -
Vian4g00189 483 Gene3D - 261 393 - -
Vian4g00189 483 CDD M20_bAS 55 480 - -
Vian4g00189 483 Gene3D Zn peptidases 67 472 - -
Vian4g00189 483 Pfam Peptidase dimerisation domain 261 372 IPR011650 -
Vian4g00189 483 SUPERFAMILY Bacterial exopeptidase dimerisation domain 261 393 IPR036264 -
Vian4g00189 483 PANTHER ALLANTOATE DEIMINASE-RELATED 21 481 IPR010158 GO:0016813
Vian4g00189 483 SUPERFAMILY Zn-dependent exopeptidases 46 482 - -
Vian4g00189 483 Pfam Peptidase family M20/M25/M40 121 471 IPR002933 GO:0016787
Vian4g00189 483 FunFam Allantoate deiminase 261 393 - -
Vian4g00189 483 NCBIfam hydantoinase/carbamoylase family amidase 55 475 IPR010158 GO:0016813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00189 Vian-Chr4 1718236 1722196 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00189 4 1718236 1722196 Vian4g00189 4 1718236 1722196 ECH