Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02615 ATGATGGAGAGTGGATGGAAGGCGGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCCAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGCTCTCTTCGGAATGTGCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCATCACCTTGTGGGAATGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCCAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCATCAGGGATGAGTGATGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAACCCCAGTTCTGAATCTGGGATTGAGAGCAGTAATCCAGATCAAGTTCGAACAGCTTTTGATCCTTCTCTGGAAAATAATTCAAGGCTATCAAACACAGATGTTTCTGATCCAAGTACTTTGCCTGAAGAAATTGCTCTTACTGGGTGTTTGAATCTTCCAGAACAACCATCCACACATTCTGCTGAGGCTAATAATGGTGGCCAAATATGCTATGGTGACTTCAACTCTATGCAGACTATTCAAAAAGATGGAATTCAGCAGTGTAGTAGTCATGGTGGTGCTGTGAATTTTGAGCTGCCGCCATTACCTGGTGAAGTGGAAGCCTCACATGATGATCATCATCATCATATGATGTGGTCAAATTCTGAGATGATGACATTTCAAGCCACGCAACCACCACTTCTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCTTGA 891 0.4299 MMESGWKAEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKTSSSSPCGNATDHNNNPVGHSYDPRIRTSAASSSSSGMSDGPNIDLALVYANFLNQNPSSESGIESSNPDQVRTAFDPSLENNSRLSNTDVSDPSTLPEEIALTGCLNLPEQPSTHSAEANNGGQICYGDFNSMQTIQKDGIQQCSSHGGAVNFELPPLPGEVEASHDDHHHHMMWSNSEMMTFQATQPPLLGPEVHDADLLIGNWSPFDLP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02615 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 194 IPR045174 GO:0003700|GO:0006355
Vian3g02615 296 MobiDBLite consensus disorder prediction 143 179 - -
Vian3g02615 296 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vian3g02615 296 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vian3g02615 296 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Vian3g02615 296 MobiDBLite consensus disorder prediction 85 123 - -
Vian3g02615 296 MobiDBLite consensus disorder prediction 143 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02615 Vian-Chr3 40624456 40625346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02615 8 295 C2C2-Dof Transcription Factor Family AT3G52440 40.000 6.46e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian3g02615 zf-Dof 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02615 - - gmx:100794208 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02615 3 40624456 40625346 Vian3g02615 3 40624456 40625346 ECH
Vian2g02563 2 46323540 46324331 Vian3g02615 3 40624456 40625346 PCT