Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01161 ATGGCAGATCAAACCCGGGATTCAGGAACCGTTTCCGTTGAAGCTTCACGAGAAAGAAGGAATAAGCTTCCCAACTTTCTGCTATCTGTCAGACTTAAGTATGTCAAGCTTGGCTACCACTATGTAATCTCCAATGCTATGTACCTTTTGCTCATTCCCTTTATTGGGGTGGCTTCTGCTCATCTTTCAACTTTCTCTTACCAAGATGTTGCTCAACTATGGGAAAACCTAAAGTTCAATCTTGTCTCGGTCACTCTATGTTCTAGTCTGATAGTGTTCCTTGTTACCTTTTACTTCATGAGCCGTCCAAGAGGTGTTTACTTGGTGGACTTTGCCTGTTACAAACCAGAGCCGGACTGCACCTGCACAAGGGAGACTTTCATGGACCGGTCTGTGAAAACCGGGGTGTTTTCAGAGGAGAATTTGGCCTTTCAGAAGAAAATACTTGAGAGGTCTGGTTTGGGGCAGAAGACATACTTGCCTCCGGCAATCTTGAGTCTCCCACCAAACCCGTGTATGGCTGAAGCAAGGAAAGAAGCGGAGCAAGTAATGTTTGGAGCTATTGACCAGCTTCTGGCAAAAACTGGGGTTAAGGCAAAGGATATTGGAATTTTGGTGGTGAATTGTAGCTTGTTCAACCCCACACCATCTCTCTCTGCAATGATTGTGAACCACTACAAGTTGAGAGGGAATATCCAAAGTTATAATCTTGGTGGCATGGGTTGCAGCGCTGGCCTTATCTCCATAGACCTTGCCAAGCAGCTCCTCCAGGTTCATCCAAATTCTTATGCCTTAGTGGTAAGCATGGAGAATATCACTCTGAACTGGTATTTTGGCAACAACCGGTCAATGCTTGTTTCAAATTGTCTCTTCAGAATGGGTGGAGCAGCGGTCCTTCTCTCCAACAGGTCTTCTGATCGCAGAAGAGCCAAATACCAATTGATCCACACAGTGCGTACTCATAAGGGTGCAGATGACAAATGCTACGGTTGCGTTTTCCAAGAAGAGGATGAGAAGAAAACAATTGGTGTGGCACTCTCAAAGGACTTAATGGCTGTTGCTGGAGAAGCCCTGAAGACCAATATCACAACACTTGGGCCATTAGTACTTCCGATGTCAGAGCAGCTCTTGTTTTTCGCAACTTTGGTGGCTAGAAAAGTGTTCAAGATGAAGATAAAGCCCTACATCCCTGACTTTAAGCTAGCTTTTGAGCACTTTTGCATCCATGCTGGAGGAAGAGCAGTGTTGGATGAGTTGGAGAAGAATCTGGAGCTCAGTGATTGGCACATGGAGCCTTCAAGAATGACTCTCAACAGGTTTGGTAACACTTCTAGCAGTTCCTTGTGGTATGAACTGGCCTACACCGAAGCTAAAGGGAGGATCAGAAAAGGTGACAGGACTTGGCAGATAGCATTTGGCTCTGGCTTCAAGTGCAACAGTGCTGTGTGGCGTGCATTGAGGACCATTAATCCTGCCAAGGAGAAAAATCCTTGGATGGATGAGATTCACGACTTTCCTGTTCATGTGCCTAAAGTGGCAACCATTGGTTCCTAG 1554 0.4575 MADQTRDSGTVSVEASRERRNKLPNFLLSVRLKYVKLGYHYVISNAMYLLLIPFIGVASAHLSTFSYQDVAQLWENLKFNLVSVTLCSSLIVFLVTFYFMSRPRGVYLVDFACYKPEPDCTCTRETFMDRSVKTGVFSEENLAFQKKILERSGLGQKTYLPPAILSLPPNPCMAEARKEAEQVMFGAIDQLLAKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNRSSDRRRAKYQLIHTVRTHKGADDKCYGCVFQEEDEKKTIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHDFPVHVPKVATIGS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01161 517 PIRSF Very_long_ch_3-ktacl-CoA_syn 25 517 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vian3g01161 517 CDD CHS_like 88 483 - -
Vian3g01161 517 Gene3D - 118 485 IPR016039 GO:0016746
Vian3g01161 517 SUPERFAMILY Thiolase-like 291 487 IPR016039 GO:0016746
Vian3g01161 517 Pfam FAE1/Type III polyketide synthase-like protein 98 387 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vian3g01161 517 FunFam 3-ketoacyl-CoA synthase 116 485 - -
Vian3g01161 517 PANTHER 3-KETOACYL-COA SYNTHASE 77 508 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vian3g01161 517 SUPERFAMILY Thiolase-like 92 310 IPR016039 GO:0016746
Vian3g01161 517 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 404 484 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01161 Vian-Chr3 12859119 12861258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01161 23 515 Miscellaneous Gene Families AT2G26640 77.282 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01161 3 12859119 12861258 Vian3g01161 3 12859119 12861258 ECH