Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00942 ATGGCACTCTCGCGCCTTCGCCACCCTCTCTTCTCTCGCTCCCTTCGTATCCTCTCTTCTTCCACCAGATCCCTCTCTCGAACTTCTAATTCAACGATTTTTTCCGCGGCAGCTCAATCGAGTATAAGACCCACATCTTGCTCAGGGATTACTGGAATTAATGATAGGTCTATGAAGTCAAAGTGGACTGATGTCAAATACTTTTCATCTTCAGAATCTTCATTCGAAGTCCTTGGGATGCCAGCTTTATCACCTACAATGACGCAAGGTAATATTGCAAAATGGAGGAAGAAAGAAGGAGAAAAGATAGAAGTGGGGGATGTACTATGTGAAATTGAAACTGACAAAGCTACGCTAGAATTTGAAAGTCTTGAAGAGGGATTTCTGGCTAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCTGTTGGACAACCAATTGCTATAACAGTTGAGGATGAAAAGGACATCCAAAATGTTCCTGCTTCTGTGGGGGGTCAGGTTGAAGAGACGAAACCAGCACAGCAGGATGTTACAGATGAGAAGAAACCAGAATCAACTTCTACTATGATTAATGCATCAGAACTTCCTCCTCATGCCCTTCTTGAAATGCCAGCTTTGTCTCCGACAATGAACCAAGGTAACATTGCTAAATGGAGAAAACAAGAAGGAGACAAGATTGAAGTGGGTGATATATTGTGTGAGATAGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGGGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCGAAAGAAGTGGCAGTTGGGCACCCTATTGCAATAACAGTTGAAGATGAAAGTGACATTGAAGCTATAAAGAATTCTGTTAACAGCAGTTCAACAAACCAACAGAAGGCCCCCCAACATGACACTAAAAGTGAGGTCAAAGCTCAAAAAACCAAAATAGCACGAATCAGCCCAGCTGCGAAGTTGCTAATTGCAGAGTATGGATTGGACGCATCAACATTGAATGCAACTGGTCATTACGGCACCCTACTGAAAGGGGATGTTCTTTCTGAAATTAAGTCAGGAAAATTGTCTCCTAAACCTGTTTCACCTAAAGAAAAGGTGCTGTCATCTCAAAGTCATCAACAAGTGGCAGCTTCTCGAGAATCAAAGTCTAACTTAGGGCAGTCGGATTCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCAAAACAAAATACACCACACTTATATTTATCATCAGATGTTATACTGGATCCTCTTCTTTCCCTTCGGAAGGATCTTAAAGAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTATCAAAGTTGTAGCTGCTGCTCTTAGAAATGTACCTGAAGCAAATGCATACTGGAATGTTGAGAAGGGCGAGGTCGTTTTAAATGATTCTGTTGATATATCAATTGCAGTTGCCACGGATAAGGGCTTGATGACTCCAATAATAAAAAACGCTGATCAGAAGACTATCTCTGCTATCTCCTCAGAGGTCAAGGAACTAGCTGCAAAGGCACGTGATGGCAAGTTGAAGCCACAGGAATTCCAAGGGGGGACGTTTAGCATTTCAAACTTAGGAATGTTTCCGGTGGATAAATTTTGTGCGATTATAAATCCCCCTCAGGCCTGCATTCTTGCTGTTGGGAGAGGCAACAAAGTTGTGGAACCAGTACTTGGAGATGATGGAGTTGAGAAGCCATCGGTTGCCACTAAGTTGAACTTAACGTTGTCTGCTGATCATCGTGTTTTTGATGGCAAGGTTGGAGGTGCATTTCTCTCTGCGTTGCAATCAAACTTCAGTGATATAAGACGACTTCTTTTATAA 1875 0.4181 MALSRLRHPLFSRSLRILSSSTRSLSRTSNSTIFSAAAQSSIRPTSCSGITGINDRSMKSKWTDVKYFSSSESSFEVLGMPALSPTMTQGNIAKWRKKEGEKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDEKDIQNVPASVGGQVEETKPAQQDVTDEKKPESTSTMINASELPPHALLEMPALSPTMNQGNIAKWRKQEGDKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGHPIAITVEDESDIEAIKNSVNSSSTNQQKAPQHDTKSEVKAQKTKIARISPAAKLLIAEYGLDASTLNATGHYGTLLKGDVLSEIKSGKLSPKPVSPKEKVLSSQSHQQVAASRESKSNLGQSDSYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNVEKGEVVLNDSVDISIAVATDKGLMTPIIKNADQKTISAISSEVKELAAKARDGKLKPQEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGRGNKVVEPVLGDDGVEKPSVATKLNLTLSADHRVFDGKVGGAFLSALQSNFSDIRRLLL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00942 624 Pfam e3 binding domain 316 350 IPR004167 GO:0016746
Vian3g00942 624 Gene3D - 316 357 IPR036625 GO:0016746
Vian3g00942 624 SUPERFAMILY CoA-dependent acyltransferases 388 624 - -
Vian3g00942 624 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 379 622 - -
Vian3g00942 624 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 310 354 IPR036625 GO:0016746
Vian3g00942 624 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 195 299 - -
Vian3g00942 624 SUPERFAMILY Single hybrid motif 202 292 IPR011053 -
Vian3g00942 624 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 394 623 IPR001078 GO:0016746
Vian3g00942 624 MobiDBLite consensus disorder prediction 165 189 - -
Vian3g00942 624 CDD lipoyl_domain 204 273 - -
Vian3g00942 624 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 100 129 IPR003016 -
Vian3g00942 624 MobiDBLite consensus disorder prediction 287 311 - -
Vian3g00942 624 ProSiteProfiles Biotinyl/lipoyl domain profile. 75 151 IPR000089 -
Vian3g00942 624 Pfam Biotin-requiring enzyme 78 149 IPR000089 -
Vian3g00942 624 Pfam Biotin-requiring enzyme 202 273 IPR000089 -
Vian3g00942 624 MobiDBLite consensus disorder prediction 366 396 - -
Vian3g00942 624 ProSiteProfiles Biotinyl/lipoyl domain profile. 199 275 IPR000089 -
Vian3g00942 624 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 316 353 IPR004167 GO:0016746
Vian3g00942 624 Gene3D - 378 624 IPR023213 -
Vian3g00942 624 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 202 624 IPR045257 GO:0006086|GO:0045254
Vian3g00942 624 MobiDBLite consensus disorder prediction 356 396 - -
Vian3g00942 624 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 71 175 - -
Vian3g00942 624 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 224 253 IPR003016 -
Vian3g00942 624 SUPERFAMILY Single hybrid motif 78 167 IPR011053 -
Vian3g00942 624 Gene3D - 69 175 - -
Vian3g00942 624 Gene3D - 197 300 - -
Vian3g00942 624 CDD lipoyl_domain 80 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00942 Vian-Chr3 10265321 10278305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00942 192 624 Acyl Lipid Metabolism Gene Families AT3G13930 41.830 2.67e-106 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00942 3 10265321 10278305 Vian3g00942 3 10265321 10278305 ECH