Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00914 ATGTATTTTTTCACTGAGAAAATGCAGCGTTTGAAGCTGGGGTTTCCTGACTACATCCAGGCATTGGAAGAAGAACGCCGTAAGATTCAGGTCTTCTGCAAAGAGCTTCCTCTTTCCTTCGAGCTAGTTACTCAAGCAATTGAAGCTTGCAGACAACAGTTGTCTGGCACCACTAGCGAGTATAATTTGAATGGTCAATCGGAGTGTTCGGAGCGGACAACATCATCGGAGGGACCAGTCTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCATCATCCCCCTGTTGCGATGAAGATGACGAAGACTATGAACAGCATTCTCTCAGGCAAACGGTTTTAAATGAGAATAATAATAACAGTGATAAGAGGAAATCCGACTGGCTCAGATCTGTTCAGCTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGCGACTAAGAAAGTTCCTGGGATGGAATTGAAGAGAAGTGGGAGTGGTGGTGGTGCTTTCCAGCCATTCCACAGGGAAGAAAGAGCTACAAAGGAAACTGAAACATTGTATAAAGCACCCTCTTCAACTCGGGTACCTGCTGCGAGTTCTAGCGCCGGAGAACTCACCCCAGAAAAAAATCAGAATGAGGGACAGAGAAAGCAGCGCAGATGCTGGTCTCAGGACTTACACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAACAAATCCGAGAGCTAATGAATGTTGATGGACTCACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCACACCAGAAGGCCAAGTCCCTTGGTTCACAACAATTCCAGTCCACAAGCAGCGCCTTTTGTCCTTGTAGGGAACATTTTTGTTCAGTCACCAGAATATGCTGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTACAGCACCTGCTGGAGTTTATGCACCAGTGGCCACACATCCTAAGCCTGTTTCACAACCATCAGCCGATTCAATTAAGAAGCCACAGTTTAAGAAATTTAAGCATTCTGAACATTCAAATTCAAATGAAAGGGGTCATCACAGTGAAGGAGCCGTTCATTCAAATTCCCCTACCTCATCCTCCTCTACACACACCTCTGCTTCCCCTGGTTATTAA 1155 0.4615 MYFFTEKMQRLKLGFPDYIQALEEERRKIQVFCKELPLSFELVTQAIEACRQQLSGTTSEYNLNGQSECSERTTSSEGPVLEEFIPIKKRASSSPCCDEDDEDYEQHSLRQTVLNENNNNSDKRKSDWLRSVQLWNPDPPAEEDATKKVPGMELKRSGSGGGAFQPFHREERATKETETLYKAPSSTRVPAASSSAGELTPEKNQNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPLVHNNSSPQAAPFVLVGNIFVQSPEYAAVATSTASREVTTVTAPAGVYAPVATHPKPVSQPSADSIKKPQFKKFKHSEHSNSNERGHHSEGAVHSNSPTSSSSTHTSASPGY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00914 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 342 IPR044787 GO:0003700|GO:0006355
Vian3g00914 384 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Vian3g00914 384 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Vian3g00914 384 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Vian3g00914 384 MobiDBLite consensus disorder prediction 179 203 - -
Vian3g00914 384 Gene3D - 210 268 - -
Vian3g00914 384 MobiDBLite consensus disorder prediction 134 214 - -
Vian3g00914 384 FunFam Myb family transcription factor 210 268 - -
Vian3g00914 384 MobiDBLite consensus disorder prediction 62 81 - -
Vian3g00914 384 MobiDBLite consensus disorder prediction 340 363 - -
Vian3g00914 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Vian3g00914 384 MobiDBLite consensus disorder prediction 62 77 - -
Vian3g00914 384 MobiDBLite consensus disorder prediction 364 384 - -
Vian3g00914 384 MobiDBLite consensus disorder prediction 323 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00914 Vian-Chr3 9949613 9951418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00914 4 261 G2-like Transcription Factor Family AT1G25550 53.008 4.16e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g00914 Myb_DNA-binding 3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00914 3 9949613 9951418 Vian3g00914 3 9949613 9951418 ECH