Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00906 ATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTGCAAGCTCTGGTAGCTCATGCTTTGCTTTTCTCTTTCACTCTTCTCCTTGTTCTCAAGCTTGACCATCTCCTTCCTGACTCATGGACATGGTGGAAAGTATTTTCTCCTCTATGGCTTTTTCATGCTGTGGTGGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCGATTCCTCACGATCGGCGATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCGGGAGCAGTTATGAGATGAATTTAAGGATTGTCTTCATGCCCCTGGTATTTTTTGAAATGGTGGTTTTGTTTGATAACATCAGGATGTGTAGGGCTTTGATGCCCGGGGATGATGAAAATTTGACGGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTAATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTATGGGATTGCACAGTGCTTTGCCTTTCTTGTTTGTACTAAGTGGCATAATCCAACTATACATGGAGGCTGTCACATCACAGAACCATGTTCATCATCAAATACCATAAGATACCTAGACATGAGTAGAGGAGGCTTAGTTACTTATGCGGATGAAGATAGGGAGCAAAATGGGTTCTGCAATCTGCAGGATATTGGTGGGCATATCATGAAAATTCCATTCATTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACGCCATCCAGTGCAAAAAATCTGCAACATTGGGTCATTTTTTCGCCACTTTTTTTGTTGCAAGGAGCTGGGGTATTATTTGCTGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTGAAAGATACTCATCTATAGCATCAAAATCTCGTGAGTGCTTTGGGTTCTTTCGACATGGCTCAAGGTTACTTGGTTGGTGGTCAATAGATGAAGGAAGTAAAGAGGAAGAAGCTAGACTATTTTTTTCTGGGAGTTCTGGGTATAATACTTTTACCCCTGATACAGTGAAGAAAATGCCTAGAGCAGATCTGGTTGAGGAGATTTGGAGATTACAAGCTGCACTGGGTGAGCAAACAGAAGTTACAAAATTTAGCCAGGAGGAGTATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCAGATTAACGTGGTCCTCCTTCCTTGTAGGCATCACATTATTTGCAGCACCTGCTGCGAAAAATGTAAACGGTGCCCTGTCTGCCGTGGCACCATTGAAGAAAGGATGCCTGTATATGATGTGTAG 1410 0.4255 MLVRRRVMSWRRVAKALQALVAHALLFSFTLLLVLKLDHLLPDSWTWWKVFSPLWLFHAVVARGRFSLPAPSIPHDRRWAPFHSLVATPLLVAFELLLCIHLGSSYEMNLRIVFMPLVFFEMVVLFDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFLIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDMSRGGLVTYADEDREQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSAKNLQHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYSGDIPERYSSIASKSRECFGFFRHGSRLLGWWSIDEGSKEEEARLFFSGSSGYNTFTPDTVKKMPRADLVEEIWRLQAALGEQTEVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHIICSTCCEKCKRCPVCRGTIEERMPVYDV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00906 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 468 IPR013083 -
Vian3g00906 469 Pfam Transmembrane Fragile-X-F protein 35 297 IPR019396 -
Vian3g00906 469 SUPERFAMILY RING/U-box 413 464 - -
Vian3g00906 469 Pfam Zinc finger, C3HC4 type (RING finger) 420 462 - -
Vian3g00906 469 ProSiteProfiles Zinc finger RING-type profile. 422 457 IPR001841 -
Vian3g00906 469 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00906 Vian-Chr3 9831132 9838175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00906 8 469 C3H Transcription Factor Family AT1G73950 62.553 0.0 594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00906 3 9831132 9838175 Vian3g00906 3 9831132 9838175 ECH