Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00904 ATGATACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCTTATCAAGACCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGAGGAAGAGGAGGGCTCAACATGTACCCTGGTGAAGTCTCTCAAATCATGCATCAGCCTTGGTCTATTCCTCATAATCAGGTTCATCACCCCTTCAACACGGTGAGAGAGCACGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAACTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCATCTTAGGATCATATCAGACACCCTTGGACCGGTGGTTCAACCCGGTTCGGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAGGAAATCATGGAGGCCAAGGCCCTTGCAGCATCCAAGAGTCACAGTGAAGCCGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCTGATGAGTTAACTGTGGTGGACGAAGCTGATGAAGATGGGAGGTCTGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGGTCAGATCTGTTTCCTGAACTCATCAGGACCTTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGACGTGTAAAGAACGTGTTGTTCATCACTGGGGAAGAAGAAGACTCAAGCAGCGGCAGCGAGGACCACAACCACCAACAGCAGTACTGCATTAGCTCAATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAGCGTGGGGGAAGAGTCTGCTTCAGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1017 0.4808 MIQEDQGQCSSQAINNYHQAYQDQLLLQQQMQQQNNDIFGGGGRGGLNMYPGEVSQIMHQPWSIPHNQVHHPFNTVREHDPFLVPPQPSPYATLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGRSVIKASLCCEDRSDLFPELIRTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDSSSGSEDHNHQQQYCISSIQEALKAVMEKSVGEESASANIKRQRTNIISMS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00904 338 CDD bHLH_AtAIG1_like 148 224 - -
Vian3g00904 338 SMART finulus 159 208 IPR011598 GO:0046983
Vian3g00904 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 209 IPR036638 GO:0046983
Vian3g00904 338 PANTHER TRANSCRIPTION FACTOR BHLH30 34 334 IPR045847 GO:0003700|GO:0006355
Vian3g00904 338 CDD ACT_UUR-ACR-like 239 282 - -
Vian3g00904 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vian3g00904 338 FunFam transcription factor bHLH30 148 211 - -
Vian3g00904 338 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Vian3g00904 338 Gene3D - 148 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00904 Vian-Chr3 9816252 9818254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00904 10 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.386 2.58e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00904 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00904 3 9816252 9818254 Vian3g00904 3 9816252 9818254 ECH